BAC Information

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BAC

Clone NameMSMg01-498L03
Chromosome2 (Build37)
Map Location 150,050,897 - 150,051,395
singlet/doubletsinglet
Overlap geneEG245174
Upstream geneLOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120
Downstream gene3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498L03.T7 (MSMg01no498_l03.b1)MSMg01-498L03.TJ (MSMg01no498_l03.g1)
ACCAG574957AG574958
length755724
length of high quality
(start - end)
667 (54 - 720)500 (58 - 557)
definitionCHROMAT_FILE: MSMg01no498_l03.b1 PHD_FILE: MSMg01no498_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:50 2005CHROMAT_FILE: MSMg01no498_l03.g1 PHD_FILE: MSMg01no498_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGGGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATACTGCGTAGACACCCTATGAATGTAACCAATGTGG
TAAATCCTTTGCAAGAAAGAGTCATCTCCTAAGACATAAAAGAACACATA
CTGGGAGAGAAACCCTTTCAATGTTACCAATGTGGTAAAACTCTTGCTCG
AAATACTCATCTCCTACAACATAAAAAAGTACACACTGGAGAGAAACCCT
ATGAATGTAAGCATTGTGACAAAGCCTCTGTATGTCATATTGGTCTCCTG
TATCATAAAAGAACACATGCTGGACAGAGACCATATGAATGGAATGAATG
TGGTAAATCCATTGTATATCACAGTTGTATTAAACAATGTAAAAGAAGAC
ATACTGGAGAAAAACCCTTTGAATGTAACCAATGTGGTAAATCCTTTGCA
AGAAAGAGTAATCTCCTAAGACATAAAAGAATACATACTGGTGAGAAACC
TTATAAGTGTGACCAATGTGGTAAAGATTTTGCAAGTCCCAGTTCTCTTA
AATGCCATAAAAGAGTTCATACAGGAGAGAAACCTTATGAATGTAAACAG
TGTGGTAAAGCCTTTGCACGTTTAAGTATTCTCCGAACACATAAAAGAAC
ACATACTGGAGAAAAACCCTTTGAATGTAACGAATGTGGTAAATCCTTTG
CAAGAAAGAGTCATCTCCTAAGACATAAAAGAATACATACTGGTGAGAAA
ACTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTTCTTTTTTCTTTTCTTTTCCAGTTGTTTGATTGTGCTTT
CTGCGATTTTTAGAAAGAGATTTATCCATTTCCTCTTTAAGGACTTCTAT
CATCTTCGCATAGTTGGTTTTACGGTCTTTTCCTTATGCTTTCACCTATA
TTGGAATATGCAGGACTTGCTGTGGGGGGATAGTTTTGTTCCTTTGGTGA
CATATTTTCCTGGCTGTTATTGATTATGTTCCTAAGCTGGTGTCTGGGCA
TCTATTTTTGGTGTGATTATAGGTCTAGCTGCTGATTTCTGGGTTTGTCT
TCTCTTATATTTTGGGCTGTGAGCCTAGCTGTTAACGGCTGAGCCATCTT
TCCAGCCTGGGTTTGCCTTCTTAGGGTGGGCATTTTGTTTTTGAATTTCT
GTTTGTTCTCTGGATTTTTAGACAGTTTGTTGGATGAGTGTTGCCTTATT
TACTGATCTGTTTTGGGGTGTTTTCAAGGGTCAGTGCTTGCTGGTTTTGG
AAGTTGTTTGAAGAAGAATCTTGGCAAAAGTTTCGCCTTATGAATCTCTT
GGATCCATGTTAGAATAATGGTCTCGTGCCTTTTGCGACAGATTTTTAAT
TTTTAAACCTTAAACTGCCGCTCGGTTACTATTTTTTGTGTTAACCCTCG
TTCAATATTGTTTTTCAACTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_l03.g1 MSMg01no498_l03.g1 CHROMAT_FILE:
MSMg01no498_l03.g1 PHD_FILE: MSMg01no498_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:50 2005
         (500 letters)



>mm_chr2_150050697_150051596
          Length = 900

 Score =  926 bits (479), Expect = 0.0
 Identities = 494/499 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcttttttcttttcttttccagttgtttgattgtgctttctgcgatttttagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcttttttcttttcttttccagttgtttgattgtgctttctgcgatttttagaaag 260

                                                                       
Query: 61  agatttatccatttcctctttaaggacttctatcatcttcgcatagttggttttacggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatttatccatttcctctttaaggacttctatcatcttcgcatagttggttttacggtc 320

                                                                       
Query: 121 ttttccttatgctttcacctatattggaatatgcaggacttgctgtggggggatagtttt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctttatgctttcacctatattggaatatgcaggacttgctgtggggggatagtttt 380

                                                                       
Query: 181 gttcctttggtgacatattttcctggctgttattgattatgttcctaagctggtgtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcctttggtgacatattttcctggctgttattgattatgttcctaagctggtgtctgg 440

                                                                       
Query: 241 gcatctatttttggtgtgattataggtctagctgctgatttctgggtttgtcttctctta 300
           |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gcatctaggtttggtgtgattataggtctagctgctgatttcttggtttgtcttctctta 500

                                                                       
Query: 301 tattttgggctgtgagcctagctgttaacggctgagccatctttccagcctgggtttgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttgggctgtgagcctagctgttaacggctgagccatctttccagcctgggtttgcc 560

                                                                       
Query: 361 ttcttagggtgggcattttgtttttgaatttctgtttgttctctggatttttagacagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttagggtgggcattttgtttttgaatttctgtttgttctctggatttttagacagtt 620

                                                                       
Query: 421 tgttggatgagtgttgccttatttactgatctgttttggggtgttttcaagggtcagtgc 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 tgttggatgagtgttgccttatttactgatctattttggggtgttttcaagggtcagtgc 680

                              
Query: 481 ttgctggttttggaagttg 499
           |||||||||||||||||||
Sbjct: 681 ttgctggttttggaagttg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)