Query= MSMg01no498_l13.b1 MSMg01no498_l13.b1 CHROMAT_FILE:
MSMg01no498_l13.b1 PHD_FILE: MSMg01no498_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:52 2005
(605 letters)
>mm_chr2_57560591_57561595
Length = 1005
Score = 1096 bits (567), Expect = 0.0
Identities = 593/603 (98%), Gaps = 4/603 (0%)
Strand = Plus / Minus
Query: 5 gaattccataccatagctcatagtcaggatgccctggcagcaactgtgtcaagactaaat 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattccataccagagatcatagtcaggatgccctggcagcaactgtgtcaagactaaat 746
Query: 65 caagggcaggttaaagaccctctgagtcatcacttgggaacaaatacaactgattgcatt 124
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 745 caagggcaggttaaagaccctctgagtcatcactcgggaacaaatacatctgattgcatt 686
Query: 125 tttcttccaagagcatggttgaatagaaggctactgtacagggtccaattttagaagtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttcttccaagagcatggttgaatagaaggctactgtacagggtccaattttagaagtaa 626
Query: 185 aagattgaaaggtcattcagtccttcccaaaacgacctgacagttccttctttacaatgt 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 aagattgaaaggtcattcagtccttcccaaaatgacctgacagttccttctttacaatgt 566
Query: 245 agcatatggaacttcccccaagtttcttggtattaaatgttttgttccaatttctactga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcatatggaacttcccccaagtttcttggtattaaatgttttgttccaatttctactga 506
Query: 305 aattgattttatggcatttggctctctgtttcatttttagagtcaaaagatctgatagtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattgattttatggcatttggctctctgtttcatttttagagtcaaaagatctgatagtt 446
Query: 365 ggtatcctatgtgagctgtctccttgggcacactatgtcactaaaaccaccttactattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtatcctatgtgagctgtctccttgggcacactatgtcactaaaaccaccttactattc 386
Query: 425 cacacttgcattacctgtccaaactttagctcttcctactgcacagcaaggt--aatttc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 385 cacacttgcattacctgtccaaactttagctcttcctactgcacagcaaggtgga--ttc 328
Query: 483 aacctggctgttaatcttcatttttcccttaaataccaataaggaacttcactctctcct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aacctggctgttaatcttcatttttcccttaaataccaataaggaacttcactctctcct 268
Query: 543 cctagaaagatttccaggaaaacttccttcccaccttggtatcagagactctttacaaac 602
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 267 cctagaaagatttccaggaaaactcccttcccaccttggtatcagagactctttacaaac 208
Query: 603 ctt 605
|||
Sbjct: 207 ctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_l13.g1 MSMg01no498_l13.g1 CHROMAT_FILE:
MSMg01no498_l13.g1 PHD_FILE: MSMg01no498_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
(633 letters)
>mm_chr2_57400106_57401138
Length = 1033
Score = 1170 bits (605), Expect = 0.0
Identities = 623/629 (99%)
Strand = Plus / Plus
Query: 1 gccaagagaaacagaactgaaaggggcttggaaggaatactaagaaaaaaaactcattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccaagagaaacagaactgaaaggggcttggaaggaatactaagaaaaaaaactcattga 260
Query: 61 ctttgaaaacttaaaatcagccaaggccttgaccctgtatagttgagggaatgcatttgg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgaaaacttaaaatcagctaaggccttgaccctgtatagttgagggaatgcatttgg 320
Query: 121 cataggattcaaagaatccgtcttgggagaggaattaaggtcaccctgggtctagaaggt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataggattcaaagaatccttcttgggagaggaattaaggtcaccctgggtctagaaggt 380
Query: 181 agaaagatacttgaatggcccagtgagtagctgcaagagtcattacccatgtgaaaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaagatacttgaatggcccagtgagtagctgcaagagtcattacccatgtgaaaaacc 440
Query: 241 atacagattatctcctggggaaatgttacattgtgttccatgtaataaacatgtagaata 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacagagtgtctcctggggaaatgttacattgtgttccatgtaataaacatgtagaata 500
Query: 301 atgctccaattctaaacatcaataacaaagtgtttagaaataattctaaaaggagtaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctccaattctaaacatcaataacaaagtgtttagaaataattctaaaaggagtaaaa 560
Query: 361 tcaagaatcaacttttaaacatgagacacttttgttcaaacttttactggtagtactttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagaatcaacttttaaacatgagacacttttgttcaaacttttactggtagtactttg 620
Query: 421 cattaaactcttatttttgctaaaaattcaacaaaattgattttggagaattttacaact 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 cattaaactcttatttttgctaaaaattcaacaaaattgattttggagaattttacaatt 680
Query: 481 attaatctcatgtctgagccaccatgactcagtggattttacactgacctacacatttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaatctcatgtctgagccaccatgactcagtggattttacactgacctacacatttcc 740
Query: 541 tgcagtaacctctgtgcccattagtctgtatctgcgtggcacattccttgtcttttcttt 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 tgcagtaacctctgtgcccattagtctgtatctacgtggcacattccttgtcttttcttt 800
Query: 601 agccatctacccatattctcttttgtttt 629
|||||||||||||||||||||||||||||
Sbjct: 801 agccatctacccatattctcttttgtttt 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
