BAC Information

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BAC

Clone NameMSMg01-498P07
Chromosome2 (Build37)
Map Location 25,448,540 - 25,448,676
singlet/doubletsinglet
Overlap geneB230208H17Rik
Upstream geneLOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887
Downstream gene4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P07.T7 (MSMg01no498_p07.b1)MSMg01-498P07.TJ (MSMg01no498_p07.g1)
ACCAG575154AG575155
length1,200800
length of high quality
(start - end)
---137 (494 - 630)
definitionCHROMAT_FILE: MSMg01no498_p07.b1 PHD_FILE: MSMg01no498_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:13 2005CHROMAT_FILE: MSMg01no498_p07.g1 PHD_FILE: MSMg01no498_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACCTTCATATATATATAAAGACTCTTATTCTGAGGCTGTGTACCACTC
CCTCAAAAGAGACATAAGTATGTCCGCGTGAACGTCGTCTACGACTATAT
TGATCTCACCGAAGTCGTGCCGAGACATAGCTAACATTTATCATGTTTGT
TTGATTCATTAACGACACCACGTTTCTTCGGTTAATGCGATCACTGCGTA
CATATCCGTGGTGACCCGCAATCCTCCTGCCGCCTAAGTCTTCACTGCCG
ACGATGATACTGTAATGTGGCCGCGCGAACTCACTATCCAACCGCGTTAT
ACCAAGACGATTACACCACGGCGGCGCGCCATACGTTTTTTAATGTACGC
CGGTGTAACGGATCTTGCGGGTATAGAACGACTATAACGTATACTACTAA
TCTTTGACTGCGAGGAGATTACGTCGTAGTGATATCCTATATCGCGTTGC
TAGGACCTGATCGTAATGTATTGCTATCGGCACAGAGTATGCTACGTGAG
AGAGCTAAGCGAGTACACCGGAACTTAGTATCTATCCTCAGTAACTTCCA
ATCGCTCGGCGCTATTAATCTCATTTAGATCGACTACGCGCACTGACGAA
CGATGTAAATTAGTAGTCTCTCGCACTGAGCCTATGCGACACTCGGCATG
TCACGCGCGCGAGCTGTATGTAAGTGCATGTCTGTGATTCGTCACATAAA
GAGCCGCGAAGTATTGGGTGCTCGACACGCGCGCCGTCTCACGACCGCAT
GACAGAACTATCCACTACANCATATACAATAATATATAAATATGCCGTGT
TGATATATTATTTCTGTCGCAGATTGCGGGCCTCGCGCATCATTATTGTG
TATATCGAGTNCATGTATATATATGTCGCTGAATACTCCTATGNAGTCGC
TCTCATATATTATCAGCGTTGAAATATCCATCGATCACATCTTGCGGCTA
CTACGCATTGATATCTGCGTCACCATTATTACTACGCGCTCTATATATTC
ACAATCACGTAATGTTTATGCACCAATTATCGTTAGTCACACGTATATAT
AACATCCACTGCAGTTGTGTGTATAGCGTATAACTCGTGTATCACATATA
CACTATCTCTCTATTATCGAACNGCGAGCTGGCAGATATAAACGTGCCGT
CTACTTNAGTACTGTTTATTGGTATCACACGCGCCGCCGCGTTATACGTN

AGGAAGCCGAGGGTACGGGNNNNANCANNNANAANNNNNNNNGCNNNNNN
NNNCCGATGCAATGGGTAGGCCCGGNGNNNGCCCGGCTCGGCACTCGANG
NGANNNANANAAGTTACANGAGNAGAGGANNNNNNNNGGNNAGGNGNNGN
NANNNNANNNNNAANAATTTACCCAANAAAAGAAGAGNNGAANAAAANAN
NAANAGAGNANGNNANAGGAGNAAAAGGGGNAGNANNNANNGGNNNAGGG
GNNNAAGGAAGNNNNGNANANNGNNGGGNAGAAAGANNNGANGANNGNNN
ATGTTTTGGTAGTTGNNNAGNANANANANNGGNANATGGGTTGGNANTTT
GGGAAGNTNNNGGAGAATTTTTTTGTTTTTNNNNNGAAAAGGGAGGGAGG
GNNNNGNTTTTTTTGTCTCCCCCTNAGAGAGATGGATGTANTAATTTTTT
GGTTTAANTNGGNAGAACACTTGTCACCTCTTTTAGGGNTCAGAGATGAA
CAAATGCTACAACCTTCAGCTGCATCTCTGGTCACTGCCTCTCTCAGAGA
GCAGTTCCCCTATACCTCAATTCAAGGTGCCTGTTCTTTTGTCTGTAGTT
GGTATGACACCTGTCTATGTTGCTATGAATTGGTTTCAAGGGCTGGTGGG
GTGGCTTGGAGGATAGAAGAGCTTGCTGCAGGGCTTGATGACCTGAGTTT
GATCTTTTTTTCTTTTTTTAAAGAGTTGTATCTCATAGCCTGCCCTCCGG
TCTCCAACATACAATCTCCAAGCCCTTCTATTTTTTTTTATCCACCTCAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p07.g1 MSMg01no498_p07.g1 CHROMAT_FILE:
MSMg01no498_p07.g1 PHD_FILE: MSMg01no498_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:13 2005
         (137 letters)



>mm_chr2_25448340_25448876
          Length = 537

 Score =  257 bits (133), Expect = 2e-73
 Identities = 136/137 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgaacaaatgctacaaccttcagctgcatctctggtcactgcctctctcagagagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgaacaaatgctacaaccttcagctgcatctctggtcactgcctctctcagagagca 260

                                                                       
Query: 61  gttcccctatacctcaattcaaggtgcctgttcttttgtctgtagttggtatgacacctg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcccctacacctcaattcaaggtgcctgttcttttgtctgtagttggtatgacacctg 320

                            
Query: 121 tctatgttgctatgaat 137
           |||||||||||||||||
Sbjct: 321 tctatgttgctatgaat 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)