NAACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTTATTTTCGAAGAAGAAAAATCTTTTACTTGGAGAC
AAAGGTAAGTTACAGTACACCTCAGACTAATTAAAGATAAATCTTTTATG
CAGCAATGGTACAAAGAAAAAAGCCAGTCATATTTAATAACTCAGACAAA
ACAGCCATCCACCAAAGGAATATTGTCTTCTTTTAATTATTAGAATAAAT
CACTTCATGGAAAACTGTTAGGCACACAATGACTACAGGTGATGATAAAT
ATAACACAAAGCAATAAAAGGAGATAGATTCTCTACCCAGGCAAATTCAC
GCCGGTCACAGGGGAAACCTTGGAAGACTCATGTGCTGAGACACCTTCGA
GGTCTCATTCTTGTTATCTGTGTTGCTCTTGAACGACCTAGGCAGAGACT
TGGCCCATTACAATTGACACATTTTATTCTTTAGTACCTAGCCTTTCATA
GTATTCTAAATGAAATCAAACACTGAAATGCTCTTCTCCAAGAGCTCTTG
TTAGGACAAAATACATAGCTGATCTCTAGGCATGGTGGGTCGCGGGCACA
GCCTCAAAGCCCGGCACTAAGACAGGCTGCAGCTGGAGACACTCTGCCCG
AGCTCTGCCTCTGAAGTGCTTCCTTTTTCAGATGTCTGTGGTGCTGTAGA
CCAGACAAATTCCTTGCCTTCAAAGTGGTTTCAGTTTTTAGTTCTGCCAC
AGAAGCTTGGAAGCTGGTGCACTC

NNCCCGATGAAGTGGGTGTCCTGGNGNCTCCTGGTTCCTACCTGAGGNGA
ACNANACAAGTTACANGACGGCGGANAGAAGGGNCAGACATGAANGAACC
GAACTGACAGTTTTATGTCGCGTTTGAAATAACACAATTCCCACACAAAA
CACACGTGCATGCTCGCACGCGCGCGCGCGCGCGCACACACACACACACA
CACACACACAGAGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGTTT
TTTTTTTCCCNCCNANNACNCAGACGAACGGACAAGAGAAACCACAAACA
AAACGCGCGGGGCTTTTGGTGTTTTTAAAAACACCAAACAACACCCGGGA
AAACGCATTTTTTCCCCCCCCTCTCCATCTCGTCTTCTCTTCTGTCTATT
TATTTTTTTTTTGTATCTTCCCCCCTTTTTTTTTTTTTTTTTTTCCTTTT
TCTCCATCATTTTTATCTTCTCCACATATCAGTATAAACCTCTCATATTT
TTTCTACACCTATTCTATTTTCCCCCCAACACCCTTTATTTTCCTACTCA
ACTCATTTCCCTTTATTCCACATAACTCCTCATTTTCCCTCTTCATTTTT
GTTAGTCCAACTATATACATCTAGTCCTTTTCACTTTAGTGTACAAAACT
TTCCCTTCACCTTATTCGTTTTTCACCACTTTCTACTCCTATTTTTTTTT
CCACCATTTTCCCACCTTTTTTTTTTTTTTTTTTCCCCCACTCCCGTTTC
ACTCAATCTTCCCCCCCCACCCTTTTTATCCATTCACTATTCCATCACCC
TTTTTCTCACCACCTTTATTATCCTATATT

Query= MSMg01no498_p08.b1 MSMg01no498_p08.b1 CHROMAT_FILE:
MSMg01no498_p08.b1 PHD_FILE: MSMg01no498_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:13 2005
         (580 letters)



>mm_chr2_45047374_45048353
          Length = 980

 Score = 1067 bits (552), Expect = 0.0
 Identities = 570/576 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttattttcgaagaagaaaaatcttttacttggagacaaaggtaagttacagt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcacttatttttgaagaagaaaaatcttttacttggagacaaaggtaagttacagt 721

                                                                       
Query: 65  acacctcagactaattaaagataaatcttttatgcagcaatggtacaaagaaaaaagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acacctcagactaattaaagataaatcttttatgcagcaatggtacaaagaaaaaagcca 661

                                                                       
Query: 125 gtcatatttaataactcagacaaaacagccatccaccaaaggaatattgtcttcttttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gtcatatttaataactcagacaaaacagccatccaccaaaggaatattgtcttcttttaa 601

                                                                       
Query: 185 ttattagaataaatcacttcatggaaaactgttaggcacacaatgactacaggtgatgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttattagaataaatcacttcatggaaaactgttaggcacacaatgactacaggtgatgat 541

                                                                       
Query: 245 aaatataacacaaagcaataaaaggagatagattctctacccaggcaaattcacgccggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 aaatataacacaaagcaataaaaggagatagattctctacccaggcaaactcacgccggt 481

                                                                       
Query: 305 cacaggggaaaccttggaagactcatgtgctgagacaccttcgaggtctcattcttgtta 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 480 cacaggggaaaccttggaagactcatgtgctgagacaccttcaaggtctcattcttgtta 421

                                                                       
Query: 365 tctgtgttgctcttgaacgacctaggcagagacttggcccattacaattgacacatttta 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 420 tctgtgttgctcttgaacgacctaggcagagacttggcccattacaatggacacatttta 361

                                                                       
Query: 425 ttctttagtacctagcctttcatagtattctaaatgaaatcaaacactgaaatgctcttc 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctttagtacctatcctttcatagtattctaaatgaaatcaaacactgaaatgctcttc 301

                                                                       
Query: 485 tccaagagctcttgttaggacaaaatacatagctgatctctaggcatggtgggtcgcggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tccaagagctcttgttaggacaaaatacatagctgatctctaggcatggtgggtcgcggg 241

                                               
Query: 545 cacagcctcaaagcccggcactaagacaggctgcag 580
           |||||||||| |||||||||||||||||||||||||
Sbjct: 240 cacagcctcacagcccggcactaagacaggctgcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)