BAC Information

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BAC

Clone NameMSMg01-498P09
Chromosome2 (Build37)
Map Location 26,512,123 - 26,512,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446
Downstream geneLcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P09.T7 (MSMg01no498_p09.b1)MSMg01-498P09.TJ (MSMg01no498_p09.g1)
ACCAG575158AG575159
length778758
length of high quality
(start - end)
551 (79 - 629)319 (330 - 648)
definitionCHROMAT_FILE: MSMg01no498_p09.b1 PHD_FILE: MSMg01no498_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:13 2005CHROMAT_FILE: MSMg01no498_p09.g1 PHD_FILE: MSMg01no498_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAAGTGTACCACACACACACACACACACACACACACA
CACACACACACACACACACACACAGAGCCTTCTATTTTAATATGCCTTAA
TCAGCTTAATGGCTGGGCCACTCCTAAACTTCCACATTGCTAATGCCTCC
CCTACAATGTTCCTGAATTATTACTAAAATCTATACTCCATCTCTGCTAC
CCTAGACCCAGAGGAGGGAGCCTGGGCCACTCGTCCATGGCTCTTACATG
TCTGGTACTCTGTCGTCTACAACTTTCTTTTCTGTGTATTTTTCCTCTCC
TGGCAATGGTGATCTCCTTCCTTGGTCCCCTTGCCCACAAATCCTAAAGT
CTCACCTCTGTTTTCCTGCCCAGCCACTGGCTGCCAGCAACTTTATTTAC
CAATCAGAACCAGCTGGAGGCAGGGACTCTCAGTATTTTACATTCAGGAT
TCCCATGCAGTTATGGGAACATAATGCAAGCATAAAACCAAATCCACAAC
ACTACTTCTTCACGTGCCCAACTCACCCTCTCCTCATGCCCCTAACATCC
CACTTCCCTGGAGCATCAAGTGTACAGGATTAGGTACATTCTCTTTCACT
GANGCCAGACAAAGCAGTCCTCTGCTACATATGTTCCAGGGTCAATGGAC
CGCCCATGTCTGTTCTTTGGGTGGTGGCTTAAACTTTGGGGTCCAGTTAT
TTGAAACTGTTGGCTTTCTATGGATTGC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAATTTAGNGTGA
ACTATAGAAGTTTCACAAAAATTCTCCTGATGTTGACCTCTGGTCTTTAA
ATGCACGATCATGCACAAACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACAGATCTACCTTCCCTGTTGTGCTCAG
CATGAGCACACAGGCAGGCAGGGCCAGGGCCAGGCTTCACCCCGAAAGAA
ATATAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
GAAGGAAGGAAGGAAGGAATTTATTATTTGAAGGAAGGAAGGAAGGAAGG
AAGGAAGCTTGTTTTCTGCTGCCTGACTCAGAACTCCTGCCTCTGCCTCC
CAAGGGCTGGGATGAAAGGCCTTTGTTGCCTACAGCAGCAGCCAGTAAAA
GCATCTTGGGATTTTTAAATGTCTTTATTTTATGTTTCATAGCTAAGGAC
ACTGTGTTGTGAGCCACATCCTGACAAAATGAAATTCATGTTCTCTTTCT
ATTATCACTTGAGGCCCATCTCACCCCTTGTTCAATCCCTCTAGCATGTC
TGGATCCCTTGCTACAGTCTCCTCTCTCTTTACCATCCAGGGCTCTTAGT
TGATTAACATGTGATAATTTTGCCCCAACCTATAGTATATCTAATAACAG
TAAAACCTAGTGTGACCTGACATCATCTCAGAGCATGTATATGCACTCAC
TATTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p09.g1 MSMg01no498_p09.g1 CHROMAT_FILE:
MSMg01no498_p09.g1 PHD_FILE: MSMg01no498_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:13 2005
         (319 letters)



>mm_chr2_26511943_26512661
          Length = 719

 Score =  441 bits (228), Expect = e-128
 Identities = 292/340 (85%), Gaps = 43/340 (12%)
 Strand = Plus / Plus

                                                                       
Query: 22  aaggaagcttgttttctgct---------gcctgactcagaactcctgcctctgcctccc 72
           |||||||| |||||||||||         |||||||||||||||||||||||||||||||
Sbjct: 181 aaggaagcctgttttctgctgtgagcacagcctgactcagaactcctgcctctgcctccc 240

                                                                       
Query: 73  aagggctgggatgaaaggcctttgttgcctacagcagcagccagtaaaagcatcttggga 132
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 241 aagggctgggatgaaaggcctttgttgcctacagcagcagccag-caaagcatcttggga 299

                                                                       
Query: 133 ---------------------------------tttttaaatgtctttattttatgtttc 159
                                            |||||||||||||||||||||||| ||
Sbjct: 300 ttttttttttttttttttttttgcatcttggggtttttaaatgtctttattttatgtctc 359

                                                                       
Query: 160 atagctaaggacactgtgttgtgagccacatcctgacaaaatgaaattcatgttctcttt 219
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 360 atagctaaggacactgtgttgtgagccacatcctgacaaaatgaaattcatgctctcttt 419

                                                                       
Query: 220 ctattatcacttgaggcccatctcaccccttgttcaatccctctagcatgtctggatccc 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctattatcacttgaggcccatctcaccccttgttcaatccctctagcatgtctggatccc 479

                                                   
Query: 280 ttgctacagtctcctctctctttaccatccagggctctta 319
           ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 480 ttgctacagtctcttctctctttaccatccagggctctta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)