BAC Information

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BAC

Clone NameMSMg01-499L12
Chromosome2 (Build37)
Map Location 96,564,628 - 96,564,892
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499L12.T7 (MSMg01no499_l12.b1)MSMg01-499L12.TJ (MSMg01no499_l12.g1)
ACCAG575734AG575735
length694742
length of high quality
(start - end)
324 (308 - 631)422 (312 - 733)
definitionCHROMAT_FILE: MSMg01no499_l12.b1 PHD_FILE: MSMg01no499_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:10 2005CHROMAT_FILE: MSMg01no499_l12.g1 PHD_FILE: MSMg01no499_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTTACTATAGTCAGAACACTGGCNGGAANCACAGNNAGTTGCAAAATA
AGAGTCTGCATGTGGGACAGACAGGACATTGAAGTTTATGCCTCTCAGCC
TAAAATTAGTCTGTGGAAAATATAAAAGCAATGTTCACTTTTGAGGAGAA
AATATGTGTATGTCTTGATGATATGTCTTTTCTTTATGAAGAGTCTGAAC
AGAGGAACTGGAGAGCTATGTTAAGAATTTCTATTAAAGAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGATNGA
GTCATTACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGAG
GATATTAGCCCCAAACCTAGGATACCCAAGATAGAAGATAAAATTTCCTA
AACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCC
CTCCTTAGAAGTGGGAACAAGACACCCATGGAAGGAGTTACAGAGACAAA
GTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAG
GCATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTA
GCAAGATTTTATTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTAT
GCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCACCTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCA
GAAATTCCGGGGCCAGGAAGCAACAGTGGATGGGTTGGGGAGCAGGGGTG
GGGGCGTGATAGAGGATTTTCAGAGGGAAAACTAAAAAAGGGGATAACAT
TTGAAATTGTAAAGAAAGAAAACATATAAGAAGAAAAGACAGAGTCAATA
GAAAAAATTGAATATCTTAATATTTAATTGCACTTGAATTCACAAGGCCT
AATGTTGTATGTCTGTGCAGATGTGTGAATTCGTGTTTATGGAGTACATG
TGTGTGGTGTTACATACTCATGAGTGTGCAAGTGCATGTTTGGTGTGTAA
GTATGTGCACATTTAAAGAAGTATGTATGGAAGACAGAAGGTAATCTCCA
ATGATATTCTTTTGAAGCTGCACAAAATATCTCATTCTTGAATAAATTTC
CCTTCAGTTATTTCATTCATGAAGAAAATGAACTTAGAAATGAACAATTC
TATTACCATCATTCCCTTCTCTAGATCACCTTTCTCTCTCTTTCTCTCTC
TCTCTTTCTTTCTTTCTTTCATTTTGCAACTGATTTACTTTAACTAATAT
TGCTCATATTCCTAAAGGTATAAGGTACCTTTAGGTGGAGCATGTGAAAT
CTACAATGGACTACACTGTTGAAGAAAATGAAATTTTCCTCCTGAAGCAA
CTAACAGCTTCCAATAGCTTCTCATCTGAAGTGCTCGCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_l12.g1 MSMg01no499_l12.g1 CHROMAT_FILE:
MSMg01no499_l12.g1 PHD_FILE: MSMg01no499_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:10 2005
         (422 letters)



>mm_chr2_96564545_96565366
          Length = 822

 Score =  441 bits (228), Expect = e-128
 Identities = 254/268 (94%), Gaps = 12/268 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatactcatgagtgtgcaagtgcatgtttggtgtgtaagtatgtgcacatttaaagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acatactcatgagtgtgcaagtgcatgtttggtgtgtaagtatgtgcacatttaaagaag 289

                                                                       
Query: 61  tatgtatggaagacagaaggtaatctccaatgatattcttttgaagctgcacaaaatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tatgtatggaagacagaaggtaatctccaatgatattcttttgaagctgcacaaaatatc 229

                                                                       
Query: 121 tcattcttgaataaatttcccttcagttatttcattcatgaagaaaatgaacttaga-aa 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 228 tcattcttgaataattttcccttcagttatttcattcatgaagaaaatgaacttagataa 169

                                                                       
Query: 180 tga--------acaattctattaccatcattcccttctctagatcacctttctctctctt 231
           | |        |||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 168 t-attcaccctacaattctattaccatcattcccttctctagatcacctttctctctc-- 112

                                       
Query: 232 tctctctctctctttctttctttctttc 259
           ||||||| ||||||||||||||||||||
Sbjct: 111 tctctctttctctttctttctttctttc 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)