Query= MSMg01no499_p08.b1 MSMg01no499_p08.b1 CHROMAT_FILE:
MSMg01no499_p08.b1 PHD_FILE: MSMg01no499_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:29 2005
(278 letters)
>mm_chr2_55809980_55810657
Length = 678
Score = 414 bits (214), Expect = e-120
Identities = 259/274 (94%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 1 aataa-ataaataaataaataaataaataaataaataaataaataaaaccactagacttc 59
||||| || |||||||||| ||| ||| ||| ||| ||||||||||||| | || |||||
Sbjct: 200 aataacatgaataaataaacaaacaaacaaacaaacaaataaataaaactattacacttc 259
Query: 60 atctgtatcttcaaaagaatcacagagattgctgaaatttcaaaacaactgtaagcaaaa 119
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 atctgtgtcttcaaaagaatcacagagattgctgaaatttcagaacaactgtaagcaaaa 319
Query: 120 ggtaaaaatcactaaatctgctatctaaattaggttatttctgtccaattccaacccata 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 ggtaaaaatcactaaatctgctatctaaattaggttatttctgtccaattccaacccaca 379
Query: 180 ttaaaatttggtggcttagataggcagtgagaaaagttataaagccaaactgatgtaaat 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 ttaaaatgtggtggcttagataggcagtgagaaaagttataaagccaaactgatgtacat 439
Query: 240 aggtattggttgacgttcatttggcattatttct 273
||||||||||||||||||||||||||||||||||
Sbjct: 440 aggtattggttgacgttcatttggcattatttct 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no499_p08.g1 MSMg01no499_p08.g1 CHROMAT_FILE:
MSMg01no499_p08.g1 PHD_FILE: MSMg01no499_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:29 2005
(232 letters)
>mm_chr2_55939139_55939766
Length = 628
Score = 360 bits (186), Expect = e-104
Identities = 219/232 (94%), Gaps = 4/232 (1%)
Strand = Plus / Minus
Query: 1 atctagctacagagacatctgtctttatatctataatactgataccaccgatgcacagac 60
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct: 428 atctagctacagagacatctgcctttatatctataatactgatattactaatgcacagac 369
Query: 61 tattgtatctaatattttaccttatgctctgaaaataaaatttatattttcctgtaattt 120
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 tattgtatctaacattttaccttatgctctgaaaataaaattcatattttcctgtaattt 309
Query: 121 gttgatggatccatttccttctctcttccaggcttttccatttgagaaagatagaaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gttgatggatccatttccttctctcttccaggcttttccatttgagaaagatagaaatct 249
Query: 181 tctctttttttttttattttgatgttgctggttttagacttttacttatttg 232
|| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 248 tca----ttttttttattttgttgttgctggttttagacttttacttatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 628
Length adjustment: 9
Effective length of query: 223
Effective length of database: 619
Effective search space: 138037
Effective search space used: 138037
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
