BAC Information

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BAC

Clone NameMSMg01-500D04
Chromosome2 (Build37)
Map Location 158,463,016 - 158,615,442
singlet/doubletdoublet
Overlap geneActr5, Ppp1r16b, 2310007D09Rik
Upstream geneCtnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1
Downstream geneDhx35, LOC100043891, LOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500D04.T7 (MSMg01no500_d04.b1)MSMg01-500D04.TJ (MSMg01no500_d04.g1)
ACCAG576096AG576097
length662679
length of high quality
(start - end)
606 (47 - 652)620 (60 - 679)
definitionCHROMAT_FILE: MSMg01no500_d04.b1 PHD_FILE: MSMg01no500_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:48 2005CHROMAT_FILE: MSMg01no500_d04.g1 PHD_FILE: MSMg01no500_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,614,906 - 158,615,442)(158,463,016 - 158,463,635)
sequence
GACTCACTATATTTCGAGGATCCGCGGAATTCTCACCTTGTTCCTTACCC
TCCTCTTTTTCGGGACTGAAGCCAATAATCAGCTCCCCGCTGTGGAGGGG
AGCCCATGCCAGTTATTTAACCTAGAGCCTTGCACATGCTAGACCTATCA
TTGAACTATACAGTCACTCCTAAGCACATCAGCAGACTCAGATCACACGT
AGGCAGCTTCGGTAGTACTTTCCAGATTGAAGGCTTGGGTGCGTCCTGAG
ACTGAATGATTTTCTTCGGATTCCATCTATCTCGTGTTCCTATTTTATTT
CTGCTGACTGAGAGGACAGTTGCGCACAAGTGCGTTTCACTGAACAAGTA
CTCCCTAGCCAGAGAAATTCACTGGTACTTAACTGTAGTGGGTTGGCCTA
ATACTGCTTGTATTCTAATGCTAATTTGGGGCCCCCCAAGACACTGAGTG
AATTGTGATTGCTAAATAAAGACGCCAACAGCTAATACATGGGGCTGAGG
TTTTGGCTGACTTCACAAGAGAGGACAAGGAGGAAAAAGCTGCCATGGGA
TAAGGATCAAGAGACAGTGGTCCCAAGGGCTGCCCAATTGGAGCTGAGAG
CAGCCCAGATGAAACATAGTATATTAAGTAATAACTTGGGGTTAGCGATA
GGATCGTAGATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGCCTAAGTTATACAGACTCATTCTCAGAAATGTTCAAGA
GGAGAGGGTGAGATTTTTCACTAGATTAGGAGTGATGGACAGGCTTGAAG
TGGAGGAAAATGCACTGTCTCAGGCTGTGGCTAGCACTCAGGTAAGAGGC
CATTAGGAACTCAGGGCCCCCCTGGGAGAGCAGGGAACACCAAGGATCCA
GCCCTAACCACAGCCTTTAAGGGCGCTTGGGAGCTGGAAGACATCTCGTT
GTATTTGAGGAGAGAGGCAGCCAGAGGAGGAGGGACAGCAGTGTTGACAT
CAAGGAGTGGCTTTTCAGGCTGTAAGCCTGTGCCTGACTGTACCTGGCAG
GGCAGCTGAGGAGGAAGTTGTTGGGTAAAGGGCTCTTGGAACGGTCACGC
TGTCCACTTGGCAATCCGAGAATCCCCCTGCCATGCTGTGAGAGCCTGGT
TGTAAGAGCGCTGCTTCTCACGCCCCACCCACCCTGCCACCCATGTCCTG
TATCAGTTTGGTGGGACGGCAGCATCAGGTAGCAGTAGCTCGTGTCCAAT
TATTTTACACTAACTTTAAAACACTGACTTTCACCGGGTGGTGGTGGCAC
ACGCCTTTAATCCTAGCACTTGGGATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_d04.b1 MSMg01no500_d04.b1 CHROMAT_FILE:
MSMg01no500_d04.b1 PHD_FILE: MSMg01no500_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:48 2005
         (606 letters)



>mm_chr2_158614906_158615911
          Length = 1006

 Score =  992 bits (513), Expect = 0.0
 Identities = 531/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctcctctttttcgggactgaagccaataatcagctccccgctgtggaggggagccca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 537 accctcctctttttcgggactgaagccaataatcagctctccgctgtggaggggagccca 478

                                                                       
Query: 61  tgccagttatttaacctagagccttgcacatgctagacctatcattgaactatacagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgccagttatttaacctagagccttgcacatgctagacctatcattgaactatacagtca 418

                                                                       
Query: 121 ctcctaagcacatcagcagactcagatcacacgtaggcagcttcggtagtactttccaga 180
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 417 ctcctaagcacaccagcagactcagatcacacgtaggcagcttcggtggtactttccaga 358

                                                                       
Query: 181 ttgaaggcttgggtgcgtcctgagactgaatgattttcttcggattccatctatctcgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttgaaggcttgggtgcgtcctgagactgaatgattttcttcggattccatctatctcgtg 298

                                                                       
Query: 241 ttcctattttatttctgctgactgagaggacagttgcgcacaagtgcgtttcactgaaca 300
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttcctatttgatttctgctgacttagaggacagttgcgcacaagtgcgtttcactgaaca 238

                                                                       
Query: 301 agtactccctagccagagaaattcactggtacttaactgtagtgggttggcctaatactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agtactccctagccagagaaattcactggtacttaactgtagtgggttggcctaatactg 178

                                                                       
Query: 361 cttgtattctaatgctaatttggggccccccaagacactgagtgaattgtgattgctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cttgtattctaatgctaatttggggccccccaagacactgagtgaattgtgattgctaaa 118

                                                                       
Query: 421 taaagacgccaacagctaatacatggggctgaggttttggctgacttcacaagagaggac 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 taaagacgccaaaagctaatacatggggctgaggttttggctgacttcacaagagaggac 58

                                                                    
Query: 481 aaggaggaaaaagctgccatgggataaggatcaagagacagtggtcccaagggctgc 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  aaggaggaaaaagctgccatgggataaggatcaagagacagtggtcccaagggctgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no500_d04.g1 MSMg01no500_d04.g1 CHROMAT_FILE:
MSMg01no500_d04.g1 PHD_FILE: MSMg01no500_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:48 2005
         (620 letters)



>mm_chr2_158462816_158463835
          Length = 1020

 Score = 1106 bits (572), Expect = 0.0
 Identities = 608/620 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcctaagttatacagactcattctcagaaatgttcaagaggagagggtgagatttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cagcctaagttatacagactcattctcagaaatgttcaagaggagagggtgaggtttttc 260

                                                                       
Query: 61  actagattaggagtgatggacaggcttgaagtggaggaaaatgcactgtctcaggctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagattaggagtgatggacaggcttgaagtggaggaaaatgcactgtctcaggctgtg 320

                                                                       
Query: 121 gctagcactcaggtaagaggccattaggaactcagggcccccctgggagagcagggaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gctagcactcaggtaagaggccattaggaactcagggcccccctgggagaacagggaaca 380

                                                                       
Query: 181 ccaaggatccagccctaaccacagcctttaagggcgcttgggagctggaagacatctcgt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 381 ccaaggatccagccctaaccacagcctttaagggtgcttgggagctggaagacatctcgg 440

                                                                       
Query: 241 tgtatttgaggagagaggcagccagaggaggagggacagcagtgttgacatcaaggagtg 300
           || | |||||||||||||||||| || ||||||||| ||||||||||||| ||||| |||
Sbjct: 441 tgaagttgaggagagaggcagccggaagaggagggatagcagtgttgacaccaaggcgtg 500

                                                                       
Query: 301 gcttttcaggctgtaagcctgtgcctgactgtacctggcagggcagctgaggaggaagtt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gcttttcaggctgtaagcctgtgcctgactggacctggcagggcagctgaggaggaagtt 560

                                                                       
Query: 361 gttgggtaaagggctcttggaacggtcacgctgtccacttggcaatccgagaatccccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgggtaaagggctcttggaacggtcacgctgtccacttggcaatccgagaatccccct 620

                                                                       
Query: 421 gccatgctgtgagagcctggttgtaagagcgctgcttctcacgccccacccaccctgcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccatgctgtgagagcctggttgtaagagcgctgcttctcacgccccacccaccctgcca 680

                                                                       
Query: 481 cccatgtcctgtatcagtttggtgggacggcagcatcaggtagcagtagctcgtgtccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccatgtcctgtatcagtttggtgggacggcagcatcaggtagcagtagctcgtgtccaa 740

                                                                       
Query: 541 ttattttacactaactttaaaacactgactttcaccgggtggtggtggcacacgccttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttattttacactaactttaaaacactgactttcaccgggtggtggtggcacacgccttta 800

                               
Query: 601 atcctagcacttgggatagg 620
           ||||||||||||||||||||
Sbjct: 801 atcctagcacttgggatagg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)