BAC Information

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BAC

Clone NameMSMg01-500N15
Chromosome2 (Build37)
Map Location 73,370,564 - 73,370,984
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
Downstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172, Lnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500N15.T7 (MSMg01no500_n15.b1)MSMg01-500N15.TJ (MSMg01no500_n15.g1)
ACCAG576591AG576592
length671739
length of high quality
(start - end)
510 (162 - 671)635 (73 - 707)
definitionCHROMAT_FILE: MSMg01no500_n15.b1 PHD_FILE: MSMg01no500_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:34 2005CHROMAT_FILE: MSMg01no500_n15.g1 PHD_FILE: MSMg01no500_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTAATTCCGAGAATCGGCGGAATTCTCAGCATTGGCACCTCTAA
TGGCTGAGAAACACTTGAAGGAATGTTCAAAGTCCTTAGTCATGAAGGAA
ATGCAAATCAAAACGACTCTGAGATTCCATCTTAACAGCCTCCCCCCTTC
AGAATGGCTACGATCAAAATTCAAGTGAAAGCAAGGATGTGGAACAAGGG
GAACACTCCTTCATTGCTGGTAGGAGTGTAAACTTGTACAACCACTTTGG
AAATCAATCTGGCAATTTCTCAGAAAATTGGGAAAAATTCTTTCTCAAGA
CCCAGCTATACCACTCCTGGGCATATACCATACCACAAGGACACTTGCTC
AACTATATTCATAGCAGCTTTATTTGTAATAGAGGCTGGAAACAACCCAA
ATGTCCCTCAGCTAAAGAATGGATAAAGGGAATGTGGTTCATTTACACAA
TGGACTATTACTCAGCTATTAAAAACAAGGACATCGTGGAATTTTCAGGC
AAATGGATGGAACTAGAAAATATCCTGAGTCAGGTAGCTCAGACCCACAA
GGTCATGCATGGTATGGACACAGTTGTGAGTGGACATTAGCCATAAAGTA
TAGGATAACCATGCTACGACCCACAGACCCAAAGAAGCTAATAACAAGGA
GGCCACAGGGAAGATGCTTGC
CCATGCAGTGGGAGGCCTGGNGGCCGCCTGGCTGCATAAATTAGGTGAAC
TATAGAAGTATCGCAGAATTCCACGGCACATAAGCGCTTACGATTATCAA
TGGTTATTGTGTACAAAGCAGGAAAACAACTGAAAGCAATATAAATGTCC
ACTGTTAGAGAATTTGGCTGGATTGTGGTACATAATACAGTTAAAAATAT
GTAGTTTTTAAAAAAGAACAAATTAGATTTGTTGAGTCTTAATAGGAATG
GAAAGATAAACTTTCATACCCATGAGAATTCCATCCCTAGAGTTTCCACC
AGTTATTCAAACTTGTTCCTAATCTAGAAGCTGCAGTGAAGGGATGTCAC
AGATGTAATTAAGCCTGAGTTTAAGAGAGGGGGTCAGCTTCAGTGGGATT
AAATGGGTAGGTCTTATCCTGGCATCCATACATGAATGTAAGAAGTCTGC
ATATGGAGAGTCTTTGTTCTTGGATGTGAGGACTGTGCTGGCTTCCGAGT
GCAAAGAGCAACCTTGAAGCTGGCAGCTAGGAAGGAAAGGGGCACCTCAG
CCCCTTCTCAGTCAGGAGCTTAGTTTTGCCAGTGACCAGAATGAGCCTGG
AATGGATCTTCCCTCAGTGCCTCTAGTCAAGAGCCCAGCCTCTCATCAGA
GGACTGAGCCATATGGTGCTCACTTACAGAGAGCCCTGAAATAATAAATG
GATGTGGTTTGAGCTGGTAAACTTATGATAATTTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_n15.g1 MSMg01no500_n15.g1 CHROMAT_FILE:
MSMg01no500_n15.g1 PHD_FILE: MSMg01no500_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:34 2005
         (635 letters)



>mm_chr2_73370564_73371598
          Length = 1035

 Score =  708 bits (366), Expect = 0.0
 Identities = 408/422 (96%), Gaps = 1/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acggcacataagcgcttacgattatcaatggttattgtgtacaaagcaggaaaacaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acggcacataagcgcttacgattatcaatggttattgtgtacaaagcaggaaaacaactg 362

                                                                       
Query: 61  aaagcaatataaatgtccactgttagagaatttggctggattgtggtacataatacagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagcaatataaatgtccactgttagagaatttggctggattgtggtacataatacagtt 302

                                                                       
Query: 121 aaaaatatgtagtttttaaaaaagaacaaattagatttgttgagtcttaataggaatgga 180
           ||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 301 aaaaatatgtagttaaaaaaaaagaacaaattagatttgttgagtcttaagaggaatgga 242

                                                                       
Query: 181 aagataaactttcatacccatgagaattccatccctagagtttccaccagttattcaaac 240
           |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct: 241 aagataaactttcatacccatgcgacttctatccctagagtttccaccagttattcaaac 182

                                                                       
Query: 241 ttgttcctaatctagaagctgcagtgaagggatgtcacagatgtaattaagcctgagttt 300
            ||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 -tggccctaatctagaagctgcagtgaagggatgccacagatgtaattaagcctgagttt 123

                                                                       
Query: 301 aagagagggggtcagcttcagtgggattaaatgggtaggtcttatcctggcatccataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aagagagggggtcagcttcagtgggattaaatgggtaggtcttatcctggcatccataca 63

                                                                       
Query: 361 tgaatgtaagaagtctgcatatggagagtctttgttcttggatgtgaggactgtgctggc 420
           ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 62  tgaatgtaagaagtctgcaaacggagagtctttgttcctggatgtgaggactgtgctggc 3

             
Query: 421 tt 422
           ||
Sbjct: 2   tt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)