BAC Information

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BAC

Clone NameMSMg01-501C08
Chromosome2 (Build37)
Map Location 143,575,840 - 143,576,300
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501C08.T7 (MSMg01no501_c08.b1)MSMg01-501C08.TJ (MSMg01no501_c08.g1)
ACCAG576815AG576816
length702710
length of high quality
(start - end)		487 (29 - 515)586 (55 - 640)
definitionCHROMAT_FILE: MSMg01no501_c08.b1 PHD_FILE: MSMg01no501_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:56 2005CHROMAT_FILE: MSMg01no501_c08.g1 PHD_FILE: MSMg01no501_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCCGTCAATTTC
AATGGTTAAGTGTTTGTGAAGACAGTAAAGTTAAACCTAATCAAAACGTG
ATATAATGAAATGTCACATGGTAATAGTACGGTGTACATTTTGTGTATAG
GTTAAAAAAAAAACCTAATTTAAATTTTAAAGTAAATTAAGTCATAAATA
AAACAGCTGCTTCCATTATTATCCCTGCCCTTGGGTGAAGATCATAAAAG
CATGTGAATTTCAGTTCTCAGCACAGAAGCATATCAGACACAGAGTTCTT
TCTCCATTGTCTTTGCTTCTAACCTGTAGACAAGGCAGAAGTTATCTCCT
TCAGTTATTGATAGGGATAGGTTAAGAAAGACTGAATAGCTTCTCTGGTC
AAACAAACCAGGTTCAGTCAATAATAGACCATGTTTTATAATACTTTAAA
AATCTAAATAATTATTGCTTCTTTTTTTTGGGTTTGGGTTTGGGTTTGGG
NTTTGGGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGTGTTCCTGTGTATCAGTGTGATGCTTGTCTATAATTATTCTCTC
TTCTCTCTCTTCCTCCTCCTCCTCCTTACTTCCCTCCCCCAACCCCCACT
CTGTGTGTGTGTGTGTGGTGTATGTGTGTATGTGTGTGTTCAGTTTTTGT
AACAGGTTACTAATACCTCCTTCATAAAAATGTGTTTGGTCATGTATCTT
GTCTTTCTATTCTATGGAAAGCTCTGAGGAATATTGGAGTTAGTGTATCC
TTATATGTCTGTCAGACCTCTTCAGTGAGTCCAGGCATTCCTAAGCAGTT
TTGGTCGGAGGCTCTTTGTTACTGCTTCAGTCTCGATGCTTATCCACGGG
TGTTTAAGTTGTTTATCTCCTTTTGGTTTAATTTTGGTAAGTCAAGTCAC
ATGTGTCTAGGAATGTGTGAGTTTCTTCTACATTTTCTAATTTAATGAAA
TACAGATTTTTAAAGTATTCCCTAACTGACCTTCTGAAATTGACAGCTAT
TTTCTGTAATGTAATGCTTGTAATTTGTAGTTTGTGTCTTCTTTCTCTTT
TTTTGTTAGTTTAGTTAAGGGTTTGTCAACCTTGATTTCTTTTCAACAAA
CAGCTTTGTTGTGCTAAGGATTGTTTGTTTGCTTGCTTGAAATTGCATTT
AAAGTCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_c08.b1 MSMg01no501_c08.b1 CHROMAT_FILE:
MSMg01no501_c08.b1 PHD_FILE: MSMg01no501_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:56 2005
         (487 letters)



>mm_chr2_143575618_143576499
          Length = 882

 Score =  775 bits (401), Expect = 0.0
 Identities = 448/467 (95%), Gaps = 12/467 (2%)
 Strand = Plus / Plus

                                                                       
Query: 23  aatggttaagtgtttgtgaagacagtaaagttaaacctaatcaaaacgtgatataatgaa 82
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 223 aatggttaagtgtttgtgaagacagtaaagttaaacctaatcaaaatgtgatataatgaa 282

                                                                       
Query: 83  atgtcacatggtaatagtacggtgtacattttgtgtataggttaaaaaaaaaacctaatt 142
           || |||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 283 atatcacatggtaatagtacggtgtacattttgtgtataggttaaaaaaa----ctaatt 338

                                                                       
Query: 143 taaattttaaagtaaattaagtcataaataaaacagctgcttccattattatccctgccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaattttaaagtaaattaagtcataaataaaacagctgcttccattattatccctgccc 398

                                                                       
Query: 203 ttgggtgaagatcataaaagcatgtgaatttcagttctcagcacagaagcatatca-gac 261
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 399 ttgggtgaagatcataaaagcatgtgaatttcagttctcagcacagaagcatatcatg-c 457

                                                                       
Query: 262 acagagttctttctccattgtctttgcttctaacctgtagacaaggcagaagttatctcc 321
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acagatttctttctccattgcctttgcttctaacctgtagacaaggcagaagttatctcc 517

                                                                       
Query: 322 ttcagttattgatagggataggttaagaaagactgaatagcttctctggtcaaacaaacc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttcagttattgatagggataggttaagaaagactgaatagcttctctggtcaaacaaacc 577

                                                                       
Query: 382 aggttcagtcaataatagaccatgttttataatactttaaaaatctaaataattattgct 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aggttcagtcaataatagaccatgttttataatactttaaaaatctaaataattattgct 637

                                                          
Query: 442 tcttttttt--tg--ggtttggg-tttgggtttgggntttgggtttg 483
           |||||||||  ||  ||||| || ||||| |||||  ||||||||||
Sbjct: 638 tctttttttggtgttggttttggctttggttttggt-tttgggtttg 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 882
Length adjustment: 10
Effective length of query: 477
Effective length of database: 872
Effective search space:   415944
Effective search space used:   415944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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