Query= MSMg01no501_d22.b1 MSMg01no501_d22.b1 CHROMAT_FILE:
MSMg01no501_d22.b1 PHD_FILE: MSMg01no501_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:03 2005
(630 letters)
>mm_chr2_44061188_44062217
Length = 1030
Score = 1127 bits (583), Expect = 0.0
Identities = 613/629 (97%), Gaps = 12/629 (1%)
Strand = Plus / Minus
Query: 4 ggaattcattgaagct--tccgggaaggaaattacagtcgtctcacaggtctcctgacta 61
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggaattcattgaagctaat--gggaaggaaattacagtcgtctcacaggtctcctgacta 676
Query: 62 taggtttctgtgtgggtaaatttaacttgtcaaggtttcttacaaaatggtactagagaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 taggtttctgtgtgggtaaatttaacttgtcaaggtttcttacaaaatggtactagagaa 616
Query: 122 gtccaacagtcaactaaaaatagcaggaaaaagctaaaggtattcagttcccccatttca 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 615 gtccaacagtcaactaaaaatagcaggaaaaagctaaaagtattcagttcccctatttca 556
Query: 182 gttaaatagaaccagatacacccgagacaagcatcagagttagaggtggaggttttacaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gttaaatagaaccagatacacccgagacaagcatcagagttagaggtggaggttttacaa 496
Query: 242 aatgataccataagttcttcctgagttgtaaagttaaacacaataaaagtaataaatatc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatgataccataagttcttcctgagttgtaaagttaaacacaataaaagtaataaatatc 436
Query: 302 tgggaaaattaagatgcctcacttatgcaaaactacttaaaaatgaattgctcataagca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgggaaaattaagatgcctcacttatgcaaaactacttaaaaatgaattgctcataagca 376
Query: 362 aaatttcttgtgcactccacaagaatgctctaggattgacagaaaaaaaaaataacaagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaatttcttgtgcactccacaagaatgctctaggattgacagaaaaaaaaaataacaagg 316
Query: 422 ggaactactcagtgactggagtcttactttagattgtgcataaccttctataaagtatca 481
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 315 ggaactactcagtgactggagtcttactttagattgtacataaccttctataaagtatca 256
Query: 482 aacttagcaacatttgaggaagggttatcaactcctcaacagataaaactgtaacaaagt 541
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 255 aacttagcaacatttgaggaagggttatcaactcctcaacagataaaact--------gt 204
Query: 542 ttacagcagcaatatttgcatatgctaatgatgacaggggctctcagctctgctttttga 601
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttatagcagcaatatttgcatatgctaatgatgacaggggctctcagctctgctttttga 144
Query: 602 tgtgcacctttgatagcctgaccttatag 630
|||||||||||||||||||||||||||||
Sbjct: 143 tgtgcacctttgatagcctgaccttatag 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_d22.g1 MSMg01no501_d22.g1 CHROMAT_FILE:
MSMg01no501_d22.g1 PHD_FILE: MSMg01no501_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:03 2005
(602 letters)
>mm_chr2_43850133_43851132
Length = 1000
Score = 1050 bits (543), Expect = 0.0
Identities = 587/603 (97%), Gaps = 4/603 (0%)
Strand = Plus / Plus
Query: 1 ctttggttttatagttagtcagtacttttgattcatcttctccaaattcaccaaaacaat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttggttttattgttagtcagtacttttgattcatcttctccaaattcaccaaaacaat 260
Query: 61 agcttcttcagcatgtagattttgtcaattcccacccacatagtaatcctaaaatcttca 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttcttcagcgtgtagattttgtcaattcccacccacatagtaatcctaaaatcttca 320
Query: 121 gcttttaggtctgaactagcaacaagttcctccatgcttgctaaataaaagaaataacaa 180
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gct---aggtctgaactagcaacaagttcctccacacttgctaaataaaagaaataacaa 377
Query: 181 ttatatatgtgagattaagatgaaataagtgagctttaatatagacatgtggactggaag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 378 ttatatatgtgagattaagatgaaataagtgagttttaatatagacatgtggactgggag 437
Query: 241 aagtggcattaactcgccctcaaatgccatgattcctaatgaaaacaataggcaagcact 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 438 aagtggcattaactcgccctcaaatggcatgattcctaatgaaaacaataggcaagcact 497
Query: 301 actgactccgtttgattgctagactgtagaaagcttcacaaagtggtcaatgtttacaca 360
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 498 actgactctgtttgattgctagactgtagaaagcttcacaaagtggtcgatgtctacaca 557
Query: 361 aatcatgttaaagcttgtctttcaactgtttattcctagagtatgagaccaaagaactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatcatgttaaagcttgtctttcaactgtttattcctagagtatgagaccaaagaactga 617
Query: 421 aagccatagaggatgccttaacaaaagaaattcatgttcacttgcttatctacggatgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aagccatagaggatgccttaacaaaagaaattcatgttcacttgcttatctacggatgat 677
Query: 481 tagatatctaaataacatgtttaaggtgaatagccaccataatccttattgcatggcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagatatctaaataacatgtttaaggtgaatagccaccataatccttattgcatggcaaa 737
Query: 541 aaaaaaaaaaa-tccctcatcactttcatctttccagtttgactctaatattattttgaa 599
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 738 aaaaaaaaaaaatccctcatcactttcatctttccagtttgactctaatgttattttgca 797
Query: 600 ctc 602
|||
Sbjct: 798 ctc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1000
Length adjustment: 10
Effective length of query: 592
Effective length of database: 990
Effective search space: 586080
Effective search space used: 586080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
