BAC Information

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BAC

Clone NameMSMg01-501F08
Chromosome2 (Build37)
Map Location 151,322,600 - 151,323,153
singlet/doubletsinglet
Overlap geneNsfl1c
Upstream geneLOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik
Downstream geneFkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501F08.T7 (MSMg01no501_f08.b1)MSMg01-501F08.TJ (MSMg01no501_f08.g1)
ACCAG576955AG576956
length723771
length of high quality
(start - end)		602 (36 - 637)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no501_f08.b1 PHD_FILE: MSMg01no501_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:09 2005CHROMAT_FILE: MSMg01no501_f08.g1 PHD_FILE: MSMg01no501_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTCCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTCTCTGTAGTCTC
ACTTCTTGAGTTCTTTGAATGTATTGGATATTAGCCTGCTATTGGGTGTA
GGGTTGGTGAAGATCATTTCTCATTTTATGGCTTGCATTTTGTCCTATTA
CAGTGTCCTTTGCTTTGTAATTTTATGAGGTCCCATTTGTCAATGCTTGA
TTTTAGAGCATAAGCTACTGGTGTTCTGTTCAGAAAAATTTTCTTCTGTG
CCCATGTGCTTGATGCTCTTCCTACTTTCTTTTCTATTAGATTCAGTGTA
TCTGGTTTCATATGGAGGTCCTTGATCCACTTGGACTTGAGCTTTGTACA
AGGAGATAAGAATGCATTTGCATTCTTCTGCATGCTAACCACCAGTTGAG
CCAGCAAAATTTGTTGAAAATACTGTCTTTTTTCCACTGGATGGTTTTAG
CTCCTTTGTCAAAAATCAAGTGTCCATAGTTGTGTGGGTTCATTTCTGGG
CCTTTAATTCCATTCCATTTATCTACCTGCCTATCAATATACCAATACCA
TACAATTTCTATCACTATTGCTCTCTGGTACAGCTTGAAGTCAAGGATGC
TGATTTCCTCANGGCAATGACACTTCTTATGAAAGTGTCTTCAGAGCATC
CATCACTGGAAATCTACCCCAGN

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAACCCAGCAAAATTTTCTGACAAC
ATATACCCTGGAGTAAGTGCAATTAGACTAAAAGTATGAAAGAAGTGTGG
GAGCTCAGATGCTTCTGTAGAGAGAATCTGGGAAGGCCAACATTCTCCTC
ATGAGCCAATCACAAAAGTGATTGACTGTGGCCAAAGGTCTAGGGAAGGT
GGCATAACACAAATGTTAGTTAACTCCCCGTGTCAACTTCAGAAGAGGTA
TCTATTTCCATGATCATCTTACTAGTGTGATAGGCCATTAACTTCATCTC
TACTATGGCACTCCTAGTCCAGAAATAAGACAAGTGACTCCCCAAAGTTC
ATAAACACAGCCCTTAAAGATCTTAAGTAGGGGCTAGAGAGATGGCTTGG
CAGTTAGGAGCATTGAATGTTCTCCCAGAAGCCCCAGTTCAAGTCCCAGC
ACCCACATGGTGCCCAAAATCATGTATTAACTCCAGTTTCAGAAAATCCA
ATGCCTTCTTCTGGTCCCCACAGTGCATAAACATACAGGCAGGCAGAACA
CCCATTCACATTCAAAACAAAAACAAGGAAGCAAGCNAGCAAGCAAGCAA
GCTAACAAACAAACAAACCAAGCCACAAAAAAACCCTTGTAAGGTGACCT
TTTGATCCCTCAGNTCTTTTTAGTTGATCTTTAACCTCCTTGGGTCATAA
TCTGGTCAGTCAGAAAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_f08.g1 MSMg01no501_f08.g1 CHROMAT_FILE:
MSMg01no501_f08.g1 PHD_FILE: MSMg01no501_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:09 2005
         (577 letters)



>mm_chr2_151322600_151323576
          Length = 977

 Score = 1017 bits (526), Expect = 0.0
 Identities = 547/554 (98%), Gaps = 1/554 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacccagcaaaattttctgacaacatataccctggagtaagtgcaattagactaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacccagcaaaattttctgacaacatataccctggagtaagtgcaattagactaaaagt 495

                                                                       
Query: 61  atgaaagaagtgtgggagctcagatgcttctgtagagagaatctgggaaggccaacattc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 494 atgaaagaagtgtgggagctcagacgcttctgtagagagaatctgggaaggccaacattc 435

                                                                       
Query: 121 tcctcatgagccaatcacaaaagtgattgactgtggccaaaggtctagggaaggtggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcctcatgagccaatcacaaaagtgattgactgtggccaaaggtctagggaaggtggcat 375

                                                                       
Query: 181 aacacaaatgttagttaactccccgtgtcaacttcagaagaggtatctatttccatgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aacacaaatgttagttaactccccgtgtcaacttcagaagaggtatctatttccatgatc 315

                                                                       
Query: 241 atcttactagtgtgataggccattaacttcatctctactatggcactcctagtccagaaa 300
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 314 atcttactagtgtgacaggccattaacctcatctctactatggcactcctagtccagaaa 255

                                                                       
Query: 301 taagacaagtgactccccaaagttcataaacacagcccttaaagatcttaagtaggggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taagacaagtgactccccaaagttcataaacacagcccttaaagatcttaagtaggggct 195

                                                                       
Query: 361 agagagatggcttggcagttaggagcattgaatgttctcccagaagccccagttcaagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agagagatggcttggcagttaggagcattgaatgttctcccagaagccccagttcaagtc 135

                                                                       
Query: 421 ccagcacccacatggtg-cccaaaatcatgtattaactccagtttcagaaaatccaatgc 479
           ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 134 ccagcacccacatggtggcccacaatcatgtattaactccagtttcaggaaatccaatgc 75

                                                                       
Query: 480 cttcttctggtccccacagtgcataaacatacaggcaggcagaacacccattcacattca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 74  cttcttctggtccccacagtgcataaacatacaggcaggcagaacacccactcacattca 15

                         
Query: 540 aaacaaaaacaagg 553
           ||||||||||||||
Sbjct: 14  aaacaaaaacaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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