BAC Information

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BAC

Clone NameMSMg01-501F14
Chromosome2 (Build37)
Map Location 31,116,006 - 31,212,121
singlet/doubletdoublet
Overlap geneFreq, LOC622345, LOC670182
Upstream geneLrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107
Downstream geneLOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501F14.T7 (MSMg01no501_f14.b1)MSMg01-501F14.TJ (MSMg01no501_f14.g1)
ACCAG576966AG576967
length713713
length of high quality
(start - end)		525 (36 - 560)578 (59 - 636)
definitionCHROMAT_FILE: MSMg01no501_f14.b1 PHD_FILE: MSMg01no501_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:10 2005CHROMAT_FILE: MSMg01no501_f14.g1 PHD_FILE: MSMg01no501_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,211,600 - 31,212,121)(31,116,006 - 31,116,583)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAC
CTTCCTGGGATAGACGATCTTTTCTAAAAGCAAAGCTATTATCCCTTATC
TACAGCCACAAAGCTTTGTTACCTAGCAAGAGCTAACACCCGTGCCAGCT
CCCTGTGGGTGTCCAAAGCATTCTATGCTACAGATATTAGCTTCCTCACT
AAAGGTGGGACAAGGGGCTGGGTGGGGTGGGGAGTGACAGGTGGATAGGG
CCAAGCGCACACTCACTTCCCACCACCAGCTGTATTTCAGCAGAGGCATC
ACCCAGCTCGTTCACAGCCTTGCAGGTATAGAGGCCAGCGTCTCTCTCCT
GAGCTTCAGGGATCCGCAGTGTCCCAGACCTAGAGTCTCCAGGAGCCAGA
ATCACTTCCAGACCTCCTAAACCAAAGATGAGAAAAAAGTCTTGGTCCTT
AGTTGCTCTGGAGCTAAGATCTCAGGCGTCCTGACCCAAGGCTCCTACGG
GTCCCACAGGAGGTTTGGTGGAGGTGGTTTTTCTGAAGTCGTGATTCCTG
GGCCCAGTCTTAAGGCATGTCGGGGTCTGAGTCTCTCCTAAGTCCCTCTG
TCATCCAGGGCTGGGATTCACCCAGACTCCGACATGGCAAGCTCCTCTCC
TCAAGTCTCCACATCCGGACCTCCTTACCATCTCACCCCCAGGTCCTACA
GAGGTCAGGATCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAATGTGTTGTCTCTGCCTCCTGTCAGGAGCCACAGCAGACTT
GGTCTGAGAAGCACTGGAATTGGGCTGTATGAAACCTTGGGGAAGTATTC
CCTATGCAGGAGTGTGCAGGAAAACACCTCACACCAGCATCCCTCTGAGG
GGCACAGAAGGTGTCGTCCCCTATAGGCTCCCTCCTCTTGGAAGGCGCCC
AGTCAGGTAGTAGAAGAGGCTTAAACTAGAGAGCAGCCCTGGTCCCTCTT
CCGTGTTTCTCACGTGTGTGTACATGTGCATGTGTGTGTCCCAGAGAGCA
ATAAAGAAGGCTGGGGACATTGCAGCAAGCGGCCATTGAACACCATCCGC
AGAAACATGTGTACCGAGCACCTACCACACACCAACCAGTACTGTTTAAC
TACAGTCGTGGGCACACATGTCCTGCTTGTTGGAGCTTGCAGCAATTGGG
AGGAGGGGACTGGACACTGAGCAGTGGCAGAGCCGTTTCTCATGCATACT
CTTTCCCCAAGGTCACAGTCAGGGACATTCCCGGCAGTCTTTTTCTTACG
CACAACTATGGTGGGCTTTGGCTCCCTATGTCCTTAGAGAAAAGCCAAGA
CTCAGAGAACTTAGTCAGTGGGTCCACGGTTACACAGNTGGATGCTGTCA
AGACTCGACCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_f14.b1 MSMg01no501_f14.b1 CHROMAT_FILE:
MSMg01no501_f14.b1 PHD_FILE: MSMg01no501_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:10 2005
         (525 letters)



>mm_chr2_31211397_31212321
          Length = 925

 Score =  986 bits (510), Expect = 0.0
 Identities = 519/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacaccttcctgggatagacgatcttttctaaaagcaaagctattatccctta 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaattccacaccagcctgggatagacgatcttttctaaaagcaaagctattatccctta 666

                                                                       
Query: 64  tctacagccacaaagctttgttacctagcaagagctaacacccgtgccagctccctgtgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tctacagccacaaagctttgttacctagcaagagctaacacccgtgccagctccctgtgg 606

                                                                       
Query: 124 gtgtccaaagcattctatgctacagatattagcttcctcactaaaggtgggacaaggggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gtgtccaaagcattctatgctacagatattagcttcctcactaaaggtgggacaaggggc 546

                                                                       
Query: 184 tgggtggggtggggagtgacaggtggatagggccaagcgcacactcacttcccaccacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgggtggggtggggagtgacaggtggatagggccaagcgcacactcacttcccaccacca 486

                                                                       
Query: 244 gctgtatttcagcagaggcatcacccagctcgttcacagccttgcaggtatagaggccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gctgtatttcagcagaggcatcacccagctcgttcacagccttgcaggtatagaggccag 426

                                                                       
Query: 304 cgtctctctcctgagcttcagggatccgcagtgtcccagacctagagtctccaggagcca 363
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 425 cgtctctctcctgagcttcagggatccgcagtgtccccgacctagagtctccaggagcca 366

                                                                       
Query: 364 gaatcacttccagacctcctaaaccaaagatgagaaaaaagtcttggtccttagttgctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaatcacttccagacctcctaaaccaaagatgagaaaaaagtcttggtccttagttgctc 306

                                                                       
Query: 424 tggagctaagatctcaggcgtcctgacccaaggctcctacgggtcccacaggaggtttgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggagctaagatctcaggcgtcctgacccaaggctcctacgggtcccacaggaggtttgg 246

                                                     
Query: 484 tggaggtggtttttctgaagtcgtgattcctgggcccagtct 525
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggaggtggtttttctgaagtcgtgattcctgggcccagtct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_f14.g1 MSMg01no501_f14.g1 CHROMAT_FILE:
MSMg01no501_f14.g1 PHD_FILE: MSMg01no501_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:10 2005
         (578 letters)



>mm_chr2_31115806_31116783
          Length = 978

 Score = 1110 bits (574), Expect = 0.0
 Identities = 577/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtgttgtctctgcctcctgtcaggagccacagcagacttggtctgagaagcactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtgttgtctctgcctcctgtcaggagccacagcagacttggtctgagaagcactgga 260

                                                                       
Query: 61  attgggctgtatgaaaccttggggaagtattccctatgcaggagtgtgcaggaaaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgggctgtatgaaaccttggggaagtattccctatgcaggagtgtgcaggaaaacacc 320

                                                                       
Query: 121 tcacaccagcatccctctgaggggcacagaaggtgtcgtcccctataggctccctcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tcacaccagcatccctctgaggggcacagaaggtgtcgtcccctacaggctccctcctct 380

                                                                       
Query: 181 tggaaggcgcccagtcaggtagtagaagaggcttaaactagagagcagccctggtccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaggcgcccagtcaggtagtagaagaggcttaaactagagagcagccctggtccctc 440

                                                                       
Query: 241 ttccgtgtttctcacgtgtgtgtacatgtgcatgtgtgtgtcccagagagcaataaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccgtgtttctcacgtgtgtgtacatgtgcatgtgtgtgtcccagagagcaataaagaa 500

                                                                       
Query: 301 ggctggggacattgcagcaagcggccattgaacaccatccgcagaaacatgtgtaccgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctggggacattgcagcaagcggccattgaacaccatccgcagaaacatgtgtaccgag 560

                                                                       
Query: 361 cacctaccacacaccaaccagtactgtttaactacagtcgtgggcacacatgtcctgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacctaccacacaccaaccagtactgtttaactacagtcgtgggcacacatgtcctgctt 620

                                                                       
Query: 421 gttggagcttgcagcaattgggaggaggggactggacactgagcagtggcagagccgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttggagcttgcagcaattgggaggaggggactggacactgagcagtggcagagccgttt 680

                                                                       
Query: 481 ctcatgcatactctttccccaaggtcacagtcagggacattcccggcagtctttttctta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcatgcatactctttccccaaggtcacagtcagggacattcccggcagtctttttctta 740

                                                 
Query: 541 cgcacaactatggtgggctttggctccctatgtcctta 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgcacaactatggtgggctttggctccctatgtcctta 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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