BAC Information

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BAC

Clone NameMSMg01-501L16
Chromosome2 (Build37)
Map Location 180,968,351 - 181,136,271
singlet/doubletdoublet
Overlap geneBC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
Upstream geneRps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628
Downstream geneBtbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501L16.T7 (MSMg01no501_l16.b1)MSMg01-501L16.TJ (MSMg01no501_l16.g1)
ACCAG577254AG577255
length708691
length of high quality
(start - end)		415 (65 - 479)320 (313 - 632)
definitionCHROMAT_FILE: MSMg01no501_l16.b1 PHD_FILE: MSMg01no501_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:36 2005CHROMAT_FILE: MSMg01no501_l16.g1 PHD_FILE: MSMg01no501_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,135,935 - 181,136,271)(180,968,351 - 180,968,670)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTCTAC
ATTTTCCCAGAGAATAATGACTAATAATAATAACAACACATTAAGGCTTT
CACAGACAACTGAAAGGCTTAATGGAGAAGAAAATAGAATGACATTTGAA
CACACACACATACACAAAAGGGTAAAGGACAAGGGTCTAGGGAGGTATCA
CTAAGCACAAGAACCTGCGCTCTATCCCAGATCCACATTACAAAGCTGGC
AGTGCAGGCATGCATGCTTGTAATGCCAGCAGTGGGGAGGGAGACCCTCT
GACTCACTGGCCTTTCAGTCTAGTTTAATTGGTAAGTTCGAGGCCAAGAA
AAGACCCAGTCTTAAAGGAAGTGAATGGTTTACCTGAGGATGACACCTGA
GGCTGTCCCCCAGCCTCCACATACATGTATATGCGTGTGTGTGTGTGTGT
GTGTGTGTGTGTATGTGTATGGTATGNGNNNNNNNNNTNNNNNTTNNNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTNNTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTNNTTT
TTTNNTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGCCACATGGCTGTTAAACTGGATCATGTACTCTTGGACCATGAT
GTGAGCTGTGCGGAAGCCCAGCACACTGTCCTCGTCTGGCGGCTCATAGT
AACAGGCAGCTGAGAGGCGCTGGCGACGTAACATCCAAGAGAAGTAGCAG
GCAGCCACAACACAGGCCTCCACAGAGTCCAGGTGGGCTGGAAGCTCCAG
GCCAGCCCCAGGGTGTCTCTTGATCAGTTCTTCGGCTTCCTCATACGACA
GCTGTGTTTTTAGAGCGGATTATGGAGGGTGCAAATCGCAGGCTCTTGAT
CTGGCCACCACCTTTCTCCATGGTGAGGAAGAGAGAGATGGCGAGGCGAT
CCTGACCAGGGAGAAGGCTGAGCGCATCCTGGCACAAGCTGGCGGGCAGC
ATGAGTACTGGCTCCCTATTGGGGGCATAGAACACAGTTCCCTGCTGGCG
GGCTTCCACGTCCAGGGCCCCATCCTTGGGCACCAAGCTGGCCACATCAG
CAATATGCACTGCCACCTCGTACACTGGGCCTAGGTCTCGGACACTAAGA
GCGTCGTCAAGGTTGCAGGCACCCTGGGGGTCCACAGTGAAGGTCAGGAA
GTGGCGGTAGTCCTCTCGGTGACCAGCGGCCGTGTTTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_l16.b1 MSMg01no501_l16.b1 CHROMAT_FILE:
MSMg01no501_l16.b1 PHD_FILE: MSMg01no501_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:36 2005
         (415 letters)



>mm_chr2_181135935_181136749
          Length = 815

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgactaataataataacaacacattaaggctttcacagacaactgaaaggcttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taatgactaataataataacaacacattaaggctttcacagacaactgaaaggcttaatg 278

                                                                       
Query: 61  gagaagaaaatagaatgacatttgaacacacacacatacacaaaagggtaaaggacaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gagaagaaaatagaatgacatttgaacacacacacatacacaaaagggtaaaggacaagg 218

                                                                       
Query: 121 gtctagggaggtatcactaagcacaagaacctgcgctctatcccagatccacattacaaa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gtctagggaggtatcaccaagcacaagaacctgcgctctatcccagatccacattacaaa 158

                                                                       
Query: 181 gctggcagtgcaggcatgcatgcttgtaatgccagcagtggggagggagaccctctgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 157 gctggcagtgcaggcatgcatgcttgtaatgccagcagtggggagggagaccctctggct 98

                                                                       
Query: 241 cactggcctttcagtctagtttaattggtaagttcgaggccaagaaaagacccagtctta 300
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 97  cactggccattcagtctagtttaattgataagttcgaggccaagaaaagacccagtctta 38

                                                
Query: 301 aaggaagtgaatggtttacctgaggatgacacctgag 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  aaggaagtgaatggtttacctgaggatgacacctgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_l16.g1 MSMg01no501_l16.g1 CHROMAT_FILE:
MSMg01no501_l16.g1 PHD_FILE: MSMg01no501_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:36 2005
         (320 letters)



>mm_chr2_180968151_180968870
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcggattatggagggtgcaaatcgcaggctcttgatctggccaccacctttctccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcggattatggagggtgcaaatcgcaggctcttgatctggccaccacctttctccatg 260

                                                                       
Query: 61  gtgaggaagagagagatggcgaggcgatcctgaccagggagaaggctgagcgcatcctgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gtgaggaagagagagatggcgaggcgatcctgaccagggagaaggctgagtgcatcctgg 320

                                                                       
Query: 121 cacaagctggcgggcagcatgagtactggctccctattgggggcatagaacacagttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaagctggcgggcagcatgagtactggctccctattgggggcatagaacacagttccc 380

                                                                       
Query: 181 tgctggcgggcttccacgtccagggccccatccttgggcaccaagctggccacatcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctggcgggcttccacgtccagggccccatccttgggcaccaagctggccacatcagca 440

                                                                       
Query: 241 atatgcactgccacctcgtacactgggcctaggtctcggacactaagagcgtcgtcaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatgcactgccacctcgtacactgggcctaggtctcggacactaagagcgtcgtcaagg 500

                               
Query: 301 ttgcaggcaccctgggggtc 320
           ||||||||||||||||||||
Sbjct: 501 ttgcaggcaccctgggggtc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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