BAC Information

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BAC

Clone NameMSMg01-501O11
Chromosome2 (Build37)
Map Location 52,482,083 - 52,482,314
singlet/doubletsinglet
Overlap geneCacnb4
Upstream geneTas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, OTTMUSG00000012638
Downstream geneStam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501O11.T7 (MSMg01no501_o11.b1)MSMg01-501O11.TJ (MSMg01no501_o11.g1)
ACCAG577387AG577388
length677590
length of high quality
(start - end)
264 (306 - 569)238 (24 - 261)
definitionCHROMAT_FILE: MSMg01no501_o11.b1 PHD_FILE: MSMg01no501_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:48 2005CHROMAT_FILE: MSMg01no501_o11.g1 PHD_FILE: MSMg01no501_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTTTTTCAAAAAGAGGCGCGGAATCATTGTTTTTCATAAAAAGA
GGAGNACTCCATTGGATAAATGTACCACATTTTCTGTATCCATTCCTCTG
TTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCT
GCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGACATCTTC
TGGATATATGCCCAGGAGAGGTATTTCTGTGTATCCTCCGGTAGTACTAT
GTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGCACCA
TCNNGCAATCCCACCAACAATGGAGGAGTGTTCCTTTTTCTCCACATCCT
CACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGG
TGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGGTGATTA
AGGATGTTGATTCTCTCTAGATTCTTGAATGACACTCTGCCTGTTCCAGA
CTGCATTGTTCAGTCTCTGTGAATATGCATAGTTTGTTTTACTATCAGTT
TCTATTTTTTTTTCTACTATGACCTTAAAAGATAGAAACATGTTTCAATT
ATTTGTACTTGGCCATACATTCTAGATCTTGAATGCTAGCTGGTTTAAAG
AAAGTTCTGTAAACTGCTGGTGGTGTG
GTTTCCACGACGAAGGGACTCCNTCCTCCTTTTCTTTGGCTCTGGGTTCA
GGCAGGACAGTACCACCACAGGCTTCTACCTCGATGAACTGTGTTACTGA
AACCCACAGGCAGTAGGGCCAATTATCACAGACTAGAACTTCCAAAACTG
TGAACCAAAATCATCCTTTCTCGTTGGAAGTTAATTATCTCATGTGTAGT
TTTTTTAAAATAGTATCAGGAAGCTGACTAACAGCATGGCGGTGAGCATA
GCTGGGTGTGNNATGGGTTCGGGATCAACACAGCACGTGGGATTGCAGGT
TTTCCTCAAGAGCCTGTGCACAAGCAGAAGCCACACAAGCCATCAGAAAG
GGAGTCAAAGACGGCGTCAGCAATGCACCCAAGCACAGACAGATAACATT
TATTTTTCCAAAGAATCTGAGATAAAGACGGCAATGTGAATGATGCCATT
TATAACAAGATGTTCCTTTTGCACACTTAGGTCAAAATTCTGTTTGCACA
GATTANAACCCCTTAACTGTACTTAGCACAATTAACATGTGCTCAGTGTT
AAAGAGCATGAATTCTGACTCCACATTCTACGTCTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_o11.g1 MSMg01no501_o11.g1 CHROMAT_FILE:
MSMg01no501_o11.g1 PHD_FILE: MSMg01no501_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:48 2005
         (238 letters)



>mm_chr2_52481880_52482517
          Length = 638

 Score =  410 bits (212), Expect = e-119
 Identities = 227/232 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   tccttttctttggctctgggttcaggcaggacagtaccaccacaggcttctacctcgatg 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 tccttttctttggctctgggttcaggcaggacagtagcaccacaggcttctacctcgatg 263

                                                                       
Query: 64  aactgtgttactgaaacccacaggcagtagggccaattatcacagactagaacttccaaa 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactgtgttactgaaacccccaggcagtagggccaattatcacagactagaacttccaaa 323

                                                                       
Query: 124 actgtgaaccaaaatcatcctttctcgttggaagttaattatctcatgtgtagttttttt 183
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| 
Sbjct: 324 actgtgaaccaaaatcatcctttctcgttggaagttaattatctcaagtgcagtttttta 383

                                                               
Query: 184 aaaatagtatcaggaagctgactaacagcatggcggtgagcatagctgggtg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatagtatcaggaagctgactaacagcatggcggtgagcatagctgggtg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)