BAC Information

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BAC

Clone NameMSMg01-501P04
Chromosome2 (Build37)
Map Location 146,547,468 - 146,714,195
singlet/doubletdoublet
Overlap geneLOC668918, Gm114
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501P04.T7 (MSMg01no501_p04.b1)MSMg01-501P04.TJ (MSMg01no501_p04.g1)
ACCAG577420AG577421
length734743
length of high quality
(start - end)
274 (327 - 600)122 (427 - 548)
definitionCHROMAT_FILE: MSMg01no501_p04.b1 PHD_FILE: MSMg01no501_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:52 2005CHROMAT_FILE: MSMg01no501_p04.g1 PHD_FILE: MSMg01no501_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,547,468 - 146,547,741)(146,714,074 - 146,714,195)
sequence
NAAACCAAAAATTGCGGTGCGAAAAGAATCACATTTCAAAACGGGCGNGG
NAATAACAGAGTACTGTCATGAGGAAACCGGAGTATCAGGGGGGAGGGGA
AGGAGGCGGGTTCGATAGAACACCTCCACAGCCTTTCTTCAGATGGGTTT
AATTTTGTCACTTGAGTCAAAATTGGAAACCCGTTTTCTAGTACAATTGC
TTCTGTGTTTAGTGAGTGTTGCAGACTCTTTATTACAGGGGAATTTTATA
ATTTTGGCACCTCATCATCAAGCCATCTTGGGGGTCAACTTCCCACTTGT
ACTTTTAGCTCTAAAGTTTTGTCNTTATAAAAGTGTCTTCTGATTTGTAA
GATTTACCATAGATTCTGAGATGAGCTTCCAAACCTAATCCCTCACCGAA
GTACCCATTTGTCTCTTCATGTTTAAACTGCTACGTTCTGTTAACTCTTA
TCAAATGCAATAGAATTCTTTAACAAGGCATCAAAGATAAATGTAGATTT
GTGTTAATTCTGCGTTTTGTTTTGTGATTGCTGTGGTGCCAGTCTGTGAT
CCTTGGGGGTGAGTACAGCAGGAATAGGAGAGGTTTAGCTTTATGGTCGA
TGCTGATATTATTCGTGTATTCCTTTTAAAATACCAAATGTATAACTGGA
AGTGCTATTTGTGGGCAGTTACTTTAAAATATTTTAAACCATATTTAAAT
CATATTTAGCTAAAGAAAACAAAATAAACCTCAC
NNNCCGATGAAGNGNGAGGCCGGGNGGTTGCCTGTTTCGGACGTGCGGGN
GAANNANANAAGGTGGCGNGACGAGGGGNCNGAAGAAAAAAGCAGGGGNN
AAGCCCAGCNGAAGNACATGGCCCAAAGGAAAGGGCANNAGNAAANNNNG
GGCNANGCANANAGNACCCCAGGGCCAANCCCNAAAAAGGGGNGAGNNNN
GAAGGCACNCNACATGGAGCNCANNCAACACGGCNANAAAGAAAGGNGAC
ATTTTTAAAAAAAAAAAAAAGCAAACCAGGGGAATACATAGGACAGAGAG
TAGTAGGGCCCAAACTCTATTTTTTTTTCTANGNAGAAAANAAAAACCAC
CAGGGGGGACCTTCATAACGACACCAAGGCANANAACAACANANANAGAA
NANNAANAGCAAAANCAAAACNCCCTGAACATCTTTAAGAAATTTTTAAG
TAATTTAAATTTACTAGTATGTTTATGGGAAACTCTGAGCCTGGTCTTTG
AAGGGTAGGAAAAAGGAGAGAAGACAGAGGCAAGCTGAGCCGAAAACATG
GCTGGGACAGAGAACATGGTGACAAGCTGAACTACAAGTCTTTAAAAGTT
AAGTGCTTTTCTTTCAGAAGGAGCAGAGCACTCCTACAGGCGGAGTACTC
CTTCCCACAGGCCCTTTCTGCATGTGGGGAGATGCATAATGGACCATGCA
CCCTTTCCTCCTCAGATTGGAAATACTAACAACCAATCTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_p04.b1 MSMg01no501_p04.b1 CHROMAT_FILE:
MSMg01no501_p04.b1 PHD_FILE: MSMg01no501_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:52 2005
         (274 letters)



>mm_chr2_146547268_146547941
          Length = 674

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaagtgtcttctgatttgtaagatttaccatagattctgagatgagcttccaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaagtgtcttctgatttgtaagatttaccatagattctgagatgagcttccaaacct 260

                                                                       
Query: 61  aatccctcaccgaagtacccatttgtctcttcatgtttaaactgctacgttctgttaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccctcaccgaagtacccatttgtctcttcatgtttaaactgctacgttctgttaact 320

                                                                       
Query: 121 cttatcaaatgcaatagaattctttaacaaggcatcaaagataaatgtagatttgtgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatcaaatgcaatagaattctttaacaaggcatcaaagataaatgtagatttgtgtta 380

                                                                       
Query: 181 attctgcgttttgttttgtgattgctgtggtgccagtctgtgatccttgggggtgagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctgcgttttgttttgtgattgctgtggtgccagtctgtgatccttgggggtgagtac 440

                                             
Query: 241 agcaggaataggagaggtttagctttatggtcga 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaggaataggagaggtttagctttatggtcga 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no501_p04.g1 MSMg01no501_p04.g1 CHROMAT_FILE:
MSMg01no501_p04.g1 PHD_FILE: MSMg01no501_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:52 2005
         (122 letters)



>mm_chr2_146713874_146714395
          Length = 522

 Score =  236 bits (122), Expect = 4e-67
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacatctttaagaaatttttaagtaatttaaatttactagtatgtttatgggaaactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaacatctttaagaaatttttaagtaatttaaatttactagtatgtttatgggaaactct 263

                                                                       
Query: 61  gagcctggtctttgaagggtaggaaaaaggagagaagacagaggcaagctgagccgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagcctggtctttgaagggtaggaaaaaggagagaagacagaggcaagctgagccgaaaa 203

             
Query: 121 ca 122
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)