BAC Information

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BAC

Clone NameMSMg01-501P16
Chromosome2 (Build37)
Map Location 11,634,396 - 11,634,543
singlet/doubletsinglet
Overlap geneIl15ra
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra
Downstream geneFbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501P16.T7 (MSMg01no501_p16.b1)MSMg01-501P16.TJ (MSMg01no501_p16.g1)
ACCAG577444AG577445
length730729
length of high quality
(start - end)
59 (265 - 323)148 (429 - 576)
definitionCHROMAT_FILE: MSMg01no501_p16.b1 PHD_FILE: MSMg01no501_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:54 2005CHROMAT_FILE: MSMg01no501_p16.g1 PHD_FILE: MSMg01no501_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAAAACACAAAAATTGCGGTCGCGAAANGAATCACTGTTTCGGACCCGC
AAGGGGGAAGAGGAGGATGACCGGACCGAGAGAGAGGCCAAACAANCCNN
NNNANAGCAAGGCAGGCAAGNACCCGCCCGAAGCAAGGGAACGGNCGGGC
AGAGCCAAGAAGAAAGGCNAACAAGGCGCACGGGCCANNCNGGNCCCGGN
GCCNGCAGGAGNGAAAAAGGCCCAGGNCGNCGGCNAANCCNCCAACGGNC
NCAGAATCTTTTAGCAGGAGACCATGACCAAGCCAAAGCATTTAGTGCTG
AGGTGCAAGTGAGGGGTCATCACTTTTTTTTTCANNGCCNCCNCCAAANC
CCCGACAGCNGCCCTTCTCCCGCCCCCCAACAAGCGGCAGGNAGCNAGGC
ANAAGGCNGGAGAAGGAGCCGACACNCNGACGACTTGAGCNGCAGGCAGC
AGAAAGAGANGCGNGNCACACGGGNCANAGNNNGGGCANANGNGACCNCA
AAGCCAACCNNCAAAANAACACACNNCCNCCCCCAAGGCCACACCNCCNA
ANAGNNCCACNCCCCAAGGGCCNNNGGGGGGCCAANNACANNCAAACAAC
CANAGGGCCNGGGNCAGGGGNNGNACNCCCACACAAAAAANCAAGACCAA
GAGGCAAANGGGGTTTTATAGAGTTTANCCAGCTTGCACTTCCATACTGG
TCTTCATCACCAAGGAAAGCAGGAATGGAT
AAAAGCGATGATAAGNGAGGCCTGGNGGNGNCCGGTTCCGACCCGANGNG
AANNANAGAAGGTTAACNGACCAGGGGGAAAANACNAGGCCGGACCNNNN
AGAAAAGGNCCCNCGGNCCGACAAAGCCAGGACCNNNGGACCGGNGAGNG
AGCNANNACANNANNGGNGGCGGGACANNNNCCAGCNANCGANCAGNANC
NCCAGAGACNGGNGAGCNCNNCAGGGAAAAGGCNAGAGGAAGACANCNAA
TTTTTCTACCCTTTCTCTTGTTTGTCCCAAGCCTGCTTCTTAACGTTATT
GTTATTGGCTTTTCTTGTTTTTTTTTGGANCNNANGAGANCACGGNNNAN
NNNGCTTTTTTCTCACCCCCGGCAGGCCCTGCCATGGGTCATTTTGAAAC
CTTGGAGGTAAAGGACCCTTATAGTCTCTTCCTCACACAGGGCATTTCCC
GCCTTGCAATTGCAGAGGCAACACATTCTGCACAGAACATCCTTTTCCTG
ATGGCTGACACTGCTGTAAATTCTACTTGGTCTTTCCACACATCTGGAGC
ACTCCTGCTCCAGGAACATGGTGTGCGGTGCGTAGAAGATGAAGCAGATG
GACACAGCTGGGAGTGATAAGACGTGGTTTAACTGCAATGCCTGAAAAAA
GTGTCTTTGTTGTTTTAGTTCAAGGATGAAGCAGAAATTGCCCAGACATT
CAACGGAAAAAGTATATCAAGCAGTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_p16.g1 MSMg01no501_p16.g1 CHROMAT_FILE:
MSMg01no501_p16.g1 PHD_FILE: MSMg01no501_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:54 2005
         (148 letters)



>mm_chr2_11634196_11634743
          Length = 548

 Score =  286 bits (148), Expect = 3e-82
 Identities = 148/148 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctcacacagggcatttcccgccttgcaattgcagaggcaacacattctgcacagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttcctcacacagggcatttcccgccttgcaattgcagaggcaacacattctgcacagaac 289

                                                                       
Query: 61  atccttttcctgatggctgacactgctgtaaattctacttggtctttccacacatctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atccttttcctgatggctgacactgctgtaaattctacttggtctttccacacatctgga 229

                                       
Query: 121 gcactcctgctccaggaacatggtgtgc 148
           ||||||||||||||||||||||||||||
Sbjct: 228 gcactcctgctccaggaacatggtgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)