Query= MSMg01no502_c24.b1 MSMg01no502_c24.b1 CHROMAT_FILE:
MSMg01no502_c24.b1 PHD_FILE: MSMg01no502_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:09 2005
(572 letters)
>mm_chr2_4774190_4775161
Length = 972
Score = 982 bits (508), Expect = 0.0
Identities = 553/568 (97%), Gaps = 2/568 (0%)
Strand = Plus / Plus
Query: 6 ggaattcttcatctctgtatctagcaatatacttttttctaaaaacctaaatttccctgt 65
||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct: 206 ggaattcttcatctctgcatctagcaatatacttttttctaagaacctaaatttcagtgt 265
Query: 66 gtctttgggaattataaagtcaagattttgtaatttaaatttttcctcacaaaattctta 125
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 gtctttggggtttataa-gtcaagattttgtaatttaaatttttcctcacaaaattccta 324
Query: 126 ttgtaaagtattttttagatgacaaaatatcctttctaaatggcaatgacccatttctcc 185
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtaaagtatttttcagatgacaaaatatcctttctaaatggcaatgacccatttctcc 384
Query: 186 agatcatccaacaattgggatttcactacgtgaatgtccttttatatctctggataaatt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatcatccaacaattgggatttcactacgtgaatgtccttttatatctctggataaatt 444
Query: 246 aataacagtaataacagcagtaccgctctgaagccctggcacttgtcagtaccgtttttc 305
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 445 aataacagtaataacagcagtaccacgctgaagccctggcacttgtcagtaccgtttttc 504
Query: 306 ctcttttctcctatctcatggcaacctaactattctctacatttatttttttt-ctattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ctcttttctcctatctcatggcaacctaactattctctacatttatttttttttctattt 564
Query: 365 tatagtttgttgtattattttgtttctagtctgttactggagctcattagaagaacattg 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatagtttgttgtattgttttgtttctagtctgttactggagctcattagaagaacattg 624
Query: 425 ttccttgctacattctgaaaacataagaagtcagtaactcgccaatcaccaggcacccag 484
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 625 ttccttgctacattctgaaaacataagaaatcagtaactcaccaatcaccaggcacccag 684
Query: 485 agcagggaatgaaagaattcatgtgtcaaacagaatataaaacacaggcttatttagtga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcagggaatgaaagaattcatgtgtcaaacagaatataaaacacaggcttatttagtga 744
Query: 545 gattcaagagcatatgaacaagggcagt 572
||||||||||||||||||||||||||||
Sbjct: 745 gattcaagagcatatgaacaagggcagt 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_c24.g1 MSMg01no502_c24.g1 CHROMAT_FILE:
MSMg01no502_c24.g1 PHD_FILE: MSMg01no502_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:09 2005
(555 letters)
>mm_chr2_4923393_4924347
Length = 955
Score = 768 bits (397), Expect = 0.0
Identities = 424/433 (97%), Gaps = 2/433 (0%)
Strand = Plus / Minus
Query: 1 agaggacaactt-ggagaatggcttctcaccttccaccctgtgggttcctagagttgaac 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agaggacaacttgggagaatggcttctcaccttccaccctgtgggttcctagagttgaac 535
Query: 60 tctgatcatcagggttgatagcaagaacctttacccactaagccttcttgccagcccaac 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 534 tctgatcatcagggttgatagcaagtacctttacccactaagccttcttgccagcccaac 475
Query: 120 tttcttccaagtccagtctagtattatgataggtgcaggaaagtcacaagttttggacca 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 474 tttcttccaagtccagtctagtattgtgataggtgcaggaaagtcacaagttttggacca 415
Query: 180 gtcgggtctatcctcttgtatacagcaagagcctgatctctcctcacaaaaacaaaagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtcgggtctatcctcttgtatacagcaagagcctgatctctcctcacaaaaacaaaagag 355
Query: 240 tagaaacaggcaacttagtgttgccatatctctgtgagtatcttagttacttttttatcc 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tagaaacaggcagcttagtgttgccatatctctgtgagtatcttagttacttttttatcc 295
Query: 300 ctgtgaagagacaccgtgaccacagcaacttataaaagaaagccttccagtttcagaggg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 294 ctgtgaagagacaccgtgaccacagcaacttataaaagaaagccttccagtttcagagcg 235
Query: 360 tgagtccatgaccatcatagcggggagcacagcagcaggcaggcaggcaggtggcaggca 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 234 tgagtccatgaccatcatagcggggagcacagcagcaggcaggcaggcaggcagcaggta 175
Query: 420 ggcaggca-ggca 431
|||||||| ||||
Sbjct: 174 ggcaggcatggca 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
