Query= MSMg01no502_e04.b1 MSMg01no502_e04.b1 CHROMAT_FILE:
MSMg01no502_e04.b1 PHD_FILE: MSMg01no502_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:14 2005
(484 letters)
>mm_chr2_167487844_167488727
Length = 884
Score = 690 bits (357), Expect = 0.0
Identities = 381/389 (97%), Gaps = 1/389 (0%)
Strand = Plus / Minus
Query: 97 cataatgtatggaatgtgcactgtgcacagatccgttaaagatgaattttgcagccgggc 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cataatgtatggaatgtgcactgtgcacagatccgttaaagatgaattttgcagccgggc 825
Query: 157 ggtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcagatctctgag 216
||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 824 agtggtggtgcacacctttaatcccagcacttgggaggcagaggcaggcagatctctgag 765
Query: 217 ttcaaggccagcttggtctacaaagtgagttccaggacagccagggctacacagagaaa- 275
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttcaaagccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaac 705
Query: 276 ccctgtctcgaaaaaacaaacaaaagacaaagaaaaagaaaaaaaaaactactgccgagc 335
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 704 ccctgtctcgaaaaaacaaacaaaagacaaagaaaaaaaaaaaaaaaactactgccgagc 645
Query: 336 tggaacccttgagattgctcccctggacttgcacggttgaaggaacaagccaaccaacgc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tggaacccttgagattgctcccctggacttgcacggttgaaggaacaagccaaccaacgc 585
Query: 396 ccaagtgttgccctttgaccacacatggacactcaagaacacacatgcacacaaaacaac 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ccaagtgttgccctttgaccacacatggacactcaagaacacacatgcacacaaaacaac 525
Query: 456 aaaaaaactacagaaagagacttccctgg 484
|||||||||||||||||||||||||||||
Sbjct: 524 aaaaaaactacagaaagagacttccctgg 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_e04.g1 MSMg01no502_e04.g1 CHROMAT_FILE:
MSMg01no502_e04.g1 PHD_FILE: MSMg01no502_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:15 2005
(611 letters)
>mm_chr2_167339046_167340056
Length = 1011
Score = 1013 bits (524), Expect = 0.0
Identities = 591/614 (96%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 1 agcatttaagtattttgtctgggcaagatgtgtgtactattttctgggccattcactttc 60
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agcatttgagtattttgtctgggcaagatgtgtgtactattttctggaccattcactttc 260
Query: 61 cattgaggaaggaattttgttttggtagtgtgagcatcctcacacttgggatgcaatctg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cattgaggaaggaattttgttttggtagtgtgagcatccgcacacttgggatgcaatctg 320
Query: 121 cgtgcatggacagagctaggtatcagcatcagatgtcttacgggtatctccacctagact 180
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcatggacagagctaggtatcaacatcagatgtcttacgggtatctccacctagact 380
Query: 181 ggctagtggggcgagtctctgtggtccgtgtctccagtggagagcactgagatctcaggc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctagtggggcgagcctctgtggtccgtgtctccagtggagagcactgagatctcaggc 440
Query: 241 gtgtacccgataccctcttcttacaatggcggtggggatctagactcaggttcttgtgct 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gtgcacccgataccctcttcttacaatggcggtggggatctagactcaggttcttatgct 500
Query: 301 tgacacagtaagcactttaccaccacagtcatctctgcagccccaggaatggttacttcc 360
|||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 501 tgacacagtacgcactttaccaccacagtaatctctgcagccccaggaatggctacttcc 560
Query: 361 tattttttagatttaattaatctcttt--ggttttttgagacagggtttctctgtgtagc 418
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 taatttttagatttaattaatctctttttggttttttgagacagggtttctctgtgtagc 620
Query: 419 cctggctgtcctggaactctttttgtagaccaggctggcctggaactcagaaatccgcct 478
||||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||
Sbjct: 621 cctggctgtcctggaactcattctgtagaccaggctggcctcgaactcagaaatctgcct 680
Query: 479 gcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgcctggcttagattta 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 gcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgcccggcttagattta 740
Query: 539 attaatttattttattttatttttatgggtgtttttctgaatgtat-tttgtataccaca 597
||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||
Sbjct: 741 attaattaattttattttatttttatgggtgttttcctgaatatatgtttgtataccaca 800
Query: 598 tgtgtccagagcct 611
||||||||||||||
Sbjct: 801 tgtgtccagagcct 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
