Query= MSMg01no502_f14.b1 MSMg01no502_f14.b1 CHROMAT_FILE:
MSMg01no502_f14.b1 PHD_FILE: MSMg01no502_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:21 2005
(632 letters)
>mm_chr2_13210417_13211447
Length = 1031
Score = 1091 bits (564), Expect = 0.0
Identities = 611/630 (96%), Gaps = 7/630 (1%)
Strand = Plus / Minus
Query: 5 gaattctgaatgttcctcaatcctcagaaatatcacaattaacttacttgtgtataaatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattctgaatgttcctcaatcctcagaaatatcacaattaacttacttgtgtataaatg 771
Query: 65 acatggtctatggtactctggtacagcaacataaaacaaaccaaggcatgtgggtcgtag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 770 acatggtctatggtactctggtacagcaacataaaacaaaccaaggcatgtgggtcatag 711
Query: 125 ggaagggtcaaagcacttactaagaagcaagtaagcatggtttatgcattacacactctt 184
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 710 ggaagggtcaaagcacttaccaagaagcgagtaagcatggtttatgcattacacactctt 651
Query: 185 aaggtctggggccatatggcggaacagaataaaattctgtgcttctgtggaatgttgtat 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaggtctggggcgatatggcggaacagaataaaattctgtgcttctgtggaatgttgtat 591
Query: 245 tcattttagaaggaaaggcagtagaattg---ttttagttaaatgtgtaacatgttgaca 301
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 590 tcattttagaaggaaaggcaatagaattggca----agttaaatgtgtaacatgttgaca 535
Query: 302 gtaatacttgtcctgaggaaaggagtcaggggatgtaggcagggttcaccttagcgaagg 361
|||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||
Sbjct: 534 gtaatacttgtcctgaggaaaggagtcaggggatgtgggcagtgttcactttagggaagg 475
Query: 362 cattgctggtggatgatagaggaagagagacctcaacagactccgtgaataccagcaagg 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 474 cattgctggtggatgatagaggaagagagacctcaacagactccatgaataccagcaagg 415
Query: 422 gtggtctgggcaaaggaaggcagatgcaatagctgggaagctagactgagctggggatgt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtggtctgggcaaaggaaggcagatgcaatagctgggaagctagactgagctggggatgt 355
Query: 482 tcaagaatctcaatcaagcagagcagacccctgaggtctgtgtgggaggagaagccattc 541
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 354 tcaagaatctcaatcaagcagagcagacccctgaggtctgtgtgggaggaaaagccattc 295
Query: 542 cattaggtctggatcactgttgtaatgggtgtagcctttgtgttaagagggtaggaagca 601
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 294 cattaggtctggatcactgttgtaatggatgtagcctttgtgttaagagggtaggaagca 235
Query: 602 gttaggcagctcctggtctgactttatctt 631
||||||||||||||||||||||||||||||
Sbjct: 234 gttaggcagctcctggtctgactttatctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space: 635062
Effective search space used: 635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_f14.g1 MSMg01no502_f14.g1 CHROMAT_FILE:
MSMg01no502_f14.g1 PHD_FILE: MSMg01no502_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:21 2005
(603 letters)
>mm_chr2_13178923_13179925
Length = 1003
Score = 1013 bits (524), Expect = 0.0
Identities = 581/608 (95%), Gaps = 15/608 (2%)
Strand = Plus / Plus
Query: 1 agaccacataaatgtctacatagagctcacttcttcagtcactctaacaggacttgaaac 60
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agaccacatgaatgtgtacatagagctcacttcttcagtcactctaacaggacttgaaac 253
Query: 61 atgaaaagaatcaatataatagcttcagtttcattttctctagagaggctacgatttgga 120
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 254 atgaaaagaatcaatataatcgcttcagttttattttctctagagaggctacgatttgga 313
Query: 121 ctgggaaaaggagacagcggggagcctggcaaagatgctcaattgccaaacctgaggacc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctgggaaagggagacagcggggagcctggcaaagatgctcaattgccaaacctgaggacc 373
Query: 181 tgagtgccatgcccggaacccacagggtgagaaagaaatcaggctctgcagattgtcctc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 374 tgagtgccatgcccggaacccacagggtgagaaagaaatcaagctctgcagattgtcctc 433
Query: 241 tgatctccacaggcaccccgtatcgttcaaagtacccaccacacacttttgtgcattcac 300
||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 434 tgacctctacaggcaccccgtatagttcaaagtgcccaccacacacttttgtgcattcac 493
Query: 301 acacctatacacacaaacacacacatacatagtacataccacaaatacatgattgtaata 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acacatatacacacaaacacacacatacatagtacataccacaaatacatgattgtaata 553
Query: 361 aaacaaagaaatttcaagaatttgtaataaaacaaagaacttctatgaagttcagtttac 420
||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacaaa---att-caagaatttttaataaaacaaagaacttctatgaagttcagtttac 609
Query: 421 aaaaacgtgac-----------aaaaaaaaaaaaaaactcctcagaaaattccgtgaact 469
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaaaacgtgaccaaaaaaaaaaaaaaaaaaaaaaaaactcctcagaaaattccgtgaact 669
Query: 470 ccaaactccaaagccatgaagatcgatggtgtcactatggctgtcatgagagaaaacaga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ccaaactccaaagccatgaagatcgatggtgtcactatggctgtcatgagagaaaacaga 729
Query: 530 agactgtctaacaaaccccatgagagccaaagtctgcagaactcagcagatggagaggag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agactgtctaacaaaccccatgagagccaaagtctgcagaactcagcagatggagaggag 789
Query: 590 agggagta 597
||||||||
Sbjct: 790 agggagta 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
