BAC Information

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BAC

Clone NameMSMg01-502J05
Chromosome2 (Build37)
Map Location 160,154,139 - 160,194,309
singlet/doubletdoublet
Overlap geneMafb
Upstream geneLOC100043689, Gm826
Downstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502J05.T7 (MSMg01no502_j05.b1)MSMg01-502J05.TJ (MSMg01no502_j05.g1)
ACCAG577897AG577898
length704706
length of high quality
(start - end)		600 (31 - 630)442 (61 - 502)
definitionCHROMAT_FILE: MSMg01no502_j05.b1 PHD_FILE: MSMg01no502_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:39 2005CHROMAT_FILE: MSMg01no502_j05.g1 PHD_FILE: MSMg01no502_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,154,139 - 160,154,734)(160,193,868 - 160,194,309)
sequence
GCCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCATTTCA
CCCTTAAGTAGATTCTGTTATTAGCCTTACTGAATGAGTGAGTGAACTGA
AGCACACAGCGATTAAGATCATTCACCTTGGGCCAAGCTATCAAAACTCA
ACTCGGAATCCTCAGCTCTTCCCTCACTTTAGACTGTTCCCTGCTCAGGT
TTGGCCTCTGTGACTAGGAGGATGCTTAGGGGAGGGAGAATGTAAAGATA
GAGGTAGAGGTAGTAAAAGAGGTAGCAGAGGAGGCAGAGGAAGAGGAAAG
GGAAGGGCAACAAACTTTAAAACCACAAGGCTACTGGAGGGGGTGCATCC
GAGCATGGGTGGGTAGGTGGGATTTATAGAGTGACCCTGCCAATTGTGTA
ACCCATGTTATAAAGAATATTTTGGAAACATGCAAAGTGAAAAGCCCTGT
GCTGTGAACACACACAGGCCTGTCAATCAGCATTTCGTGATCCTTGCCTT
GTCTCCCAGCTGTTCATTTGGCTAACATGAAGATGCTCCGCTGCATGGCC
ACCACCGAGGACAGGCCAAGCGCATTCGGAAGCAAAAGGGGTCTGGAGAT
CAGAGTCAGCGAGGCCTCANGACTTGGAAGAGAGCCAAAGGTACTAATGG
TCAGCCAGCCAGTCCCTTGCTTACCCAGCATCCCCACTGGAGAAGAGAGG
CCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCATCTATTCACTTTTGGGGTCGGGGTCGGGGTCTGAGGAA
AGTTCCACATTTCCTGCCCTTCTGGCCCAGGGCAGAGAGTCTCTGTCGGC
GCCCAACAGCCCTGTCTGAAAGCCCAGTGTTCTGCCTTCCTCCTCCCGTC
TGCGTTCCGGAGAAGTTTCTCATCCGGTAGCCCTGAACCTTCGTCACCTG
GCGTTTTCAGTTTAGAATACTGATCTTCCCAGCTCAGGACCTTTCCTGAG
AGGATTAGCCCACAAGCACACCTCGAAGGCTTGCATATGGAATTTCAGAA
AAGGTGAGCAGAGAGGGTTAGTGGTTGAGTCCAAAGATGGGGTCGGAGGG
CCTGTGCATAGTTCCAGAGGAGTCTGCCCTGGCTTCCAGGCCGCGCACAG
CCTGCGTTCAGGCCTGGCTTGGCCCGATCAGTTAGCTGGACCTGCACGGG
TCCGAGACGCCGTCCAAGCCTTCCCTCCCGCAAAGAACAAACCGGTTCAG
GGCGCCGTTGCGCACCGTGGCCACTTGGGGTCGCACTTTATGCCTGTTTG
AATCTCCTTGCAGCCGTCAGAAGCTTGGATCAGCTTAATCCTTACAAAAC
GTTCAGACAAAAACAGGGCCGGGTTCCCCAGCATCCCAGAGCCACTGAGT
GCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_j05.b1 MSMg01no502_j05.b1 CHROMAT_FILE:
MSMg01no502_j05.b1 PHD_FILE: MSMg01no502_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:39 2005
         (600 letters)



>mm_chr2_160153935_160154934
          Length = 1000

 Score = 1085 bits (561), Expect = 0.0
 Identities = 587/596 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcatttcacccttaagtagattctgttattagccttactgaatgagtgagtg 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcatcccacccttaagtagattctgttattagccttactgaatgagtgagtg 264

                                                                       
Query: 65  aactgaagcacacagcgattaagatcattcaccttgggccaagctatcaaaactcaactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactgaagcacacagcgattaagatcattcaccttgggccaagctatcaaaactcaactc 324

                                                                       
Query: 125 ggaatcctcagctcttccctcactttagactgttccctgctcaggtttggcctctgtgac 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 ggaatcctcagctcttccctcactttagactgttccctgctcaggcttggcctctgtgac 384

                                                                       
Query: 185 taggaggatgcttaggggagggagaatgtaaagatagaggtagaggtagtaaaagaggta 244
           ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 385 taggaggatgcttaggggagggagaatgtgaagatagaggtagaggtagtgaaagacgta 444

                                                                       
Query: 245 gcagaggaggcagaggaagaggaaagggaagggcaacaaactttaaaaccacaaggctac 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 gcagaggaggcagaggaagaggaaaggggagggcaacaaactttaaaaccacaaggctac 504

                                                                       
Query: 305 tggagggggtgcatccgagcatgggtgggtaggtgggatttatagagtgaccctgccaat 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tggagggggtgcatccgagcatgggtgggtgggtgggatttatagagtgaccctgccaat 564

                                                                       
Query: 365 tgtgtaacccatgttataaagaatattttggaaacatgcaaagtgaaaagccctgtgctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgtaacccatgttataaagaatattttggaaacatgcaaagtgaaaagccctgtgctg 624

                                                                       
Query: 425 tgaacacacacaggcctgtcaatcagcatttcgtgatccttgccttgtctcccagctgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaacacacacaggcctgtcaatcagcatttcgtgatccttgccttgtctcccagctgtt 684

                                                                       
Query: 485 catttggctaacatgaagatgctccgctgcatggccaccaccgaggacaggccaagcgca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catttggctaacatgaagatgctccgctgcatggccaccaccgaggacaggccaagcgca 744

                                                                   
Query: 545 ttcggaagcaaaaggggtctggagatcagagtcagcgaggcctcangacttggaag 600
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 ttcggaagcaaaaggggtctggagatcagagtcagcgaggcctcaggacttggaag 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_j05.g1 MSMg01no502_j05.g1 CHROMAT_FILE:
MSMg01no502_j05.g1 PHD_FILE: MSMg01no502_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:39 2005
         (442 letters)



>mm_chr2_160193668_160194509
          Length = 842

 Score =  801 bits (414), Expect = 0.0
 Identities = 435/442 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctattcacttttggggtcggggtcggggtctgaggaaagttccacatttcctgccct 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 642 catctattcacttttggggtcggggtcggggtctgaggaaagtcccacatttcctgccct 583

                                                                       
Query: 61  tctggcccagggcagagagtctctgtcggcgcccaacagccctgtctgaaagcccagtgt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tctggcccagggcagggagtctctgtcggcgcccaacagccctgtctgaaagcccagtgt 523

                                                                       
Query: 121 tctgccttcctcctcccgtctgcgttccggagaagtttctcatccggtagccctgaacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tctgccttcctcctcccgtctgcgttccggagaagtttctcatccggtagccctgaacct 463

                                                                       
Query: 181 tcgtcacctggcgttttcagtttagaatactgatcttcccagctcaggacctttcctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcgtcacctggcgttttcagtttagaatactgatcttcccagctcaggacctttcctgag 403

                                                                       
Query: 241 aggattagcccacaagcacacctcgaaggcttgcatatggaatttcagaaaaggtgagca 300
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 402 aggagtagcccacaagcacacctggaaggcttgcatatggaatttcagaaaaggtgagca 343

                                                                       
Query: 301 gagagggttagtggttgagtccaaagatggggtcggagggcctgtgcatagttccagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gagagggttagtggttgagtccaaagatggggtcggagggcctgtgcatagttccagagg 283

                                                                       
Query: 361 agtctgccctggcttccaggccgcgcacagcctgcgttcaggcctggcttggcccgatca 420
           ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 282 agtctgccctggctttcaggccgcacacagcctgcgttcaggcctggcttggccggatca 223

                                 
Query: 421 gttagctggacctgcacgggtc 442
           ||||||||||||||||||||||
Sbjct: 222 gttagctggacctgcacgggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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