BAC Information

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BAC

Clone NameMSMg01-502K21
Chromosome2 (Build37)
Map Location 163,309,100 - 163,356,117
singlet/doubletdoublet
Overlap geneLOC100043899
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik
Downstream geneHnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K21.T7 (MSMg01no502_k21.b1)MSMg01-502K21.TJ (MSMg01no502_k21.g1)
ACCAG577977AG577978
length735799
length of high quality
(start - end)		615 (23 - 637)423 (74 - 496)
definitionCHROMAT_FILE: MSMg01no502_k21.b1 PHD_FILE: MSMg01no502_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:47 2005CHROMAT_FILE: MSMg01no502_k21.g1 PHD_FILE: MSMg01no502_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,355,506 - 163,356,117)(163,309,100 - 163,309,521)
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGTAAGCCTAGCAGTG
GTTACCAGTGAACACGCCTTTAATCCCAGCACTTGAGAGGAAAAAACAGG
GGGATCTCTGAGTTCGAGACTAGTTAGGGACAGCCAGTGCTACAGAGAGA
AACCTTGTCTTAAAAAAATAAAACAAAACAAAGCAAAACAACAAAAACAA
AAAAGGAATTTGCTGGTTCCAATGATCCCAAAGAGCAAGCCGGAATCAAG
AGCTGGGACAAAAACTTGGACCCAGAGTAAAGACCTTGCTATGTGCTATG
ATTGTCCTACCAGGGACAATCCTGATGGATCCAAATGTTAGCTTCTTGTC
ACTGGGGGTCTTGGACACAAGCCTGGGAACCATGATGCCAAGAAAGATGG
GTTGTGGATTCCAGAAGCAAATTCTTCCAGAAAGCAAATATCTCAAATGA
AATACAACCAAACTCCAGCGCATTGGGGGAACTGGGTCTCCACGCGTAAA
AGGATGAGGTTGACGAGCTGGACGTAGTGGTGCGTTTGGAAGGGAAGAAA
GAGCAGAGGTTCAAGATCATTCCAGGACACAGGGAGTTCCTTAGTTGAGC
TAAGAGAGCTTTGTAGTGCATGTGGACGTCTCACCGTTTCAGAATTTCAG
ACCAGGATGCACTAGAAATGACCAGTCCTAATAAAGATACCTCAGTCTGC
ATTCAGCTTCCACCATGACACCCGTCAAAGACACA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTAAACAGATTTTCAAAGCCCTATC
TAGTCCTTAAAGTTGTATTGAGGTCTAACAATTTAATCCAGTCTTACATA
CAACTATGTGAATCTTTTACATGTAGTCGCCAGCATAATCGCTACCCAGA
TCGTGACATAAATTACGTACAGTCGTCATATGAAGGGATAGTGGAGGACT
GAGGATATAGGTCAGTGGTCATCCATTTTCCTAGCATGCATGAAGCTCTG
GGTCTGCTCTTCAGCGCTGTAAACAAACAAACAAACAAACAAACAAACTA
CATGAAAGACTGGAGGGGATAGACGCCTGATACATCAGAAAGTGTCTGCC
TGCCCCAAGCACGAATACCTGAGACAGGACTCCCAGTACCCATGGAGAAA
TTTGGGCATGGCTGTGTTTGCCTATAACCCTGTCACTGGAGATGCAGAGG
CAGGAGAATTCCTGGGACTTCCTGGCCAGCCAGTTGAGCTGAATGTAAGT
TCCAGGTTGAGGGAGAGAGAGTATCTCAAATGAGAAGGTCGAGCCAGGCA
GGGTAGCTCAGTCCTTACCGCCAGCACTAGGGAATCAGAGGCAGGAGAGC
TCTGTGAGTTCGAAGCCAGCCTGGTCTACATAGTGAGTTTCAGGAAAGCC
AGGGCTACCCAGTAAGACCCATCTCAAAAACAACAAACAAACAGATGGAA
AGAGATCAGAAAGAAAACATTGGTNNATCCTACTTACTACCTACCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k21.b1 MSMg01no502_k21.b1 CHROMAT_FILE:
MSMg01no502_k21.b1 PHD_FILE: MSMg01no502_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:47 2005
         (615 letters)



>mm_chr2_163355155_163356169
          Length = 1015

 Score = 1122 bits (580), Expect = 0.0
 Identities = 604/612 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtaagcctagcagtggttaccagtgaacacgcctttaatcccagcacttg 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ggaattcactgttagcctagcagtggttaccagtgaacacgcctttaatcccagcacttg 904

                                                                       
Query: 64  agaggaaaaaacagggggatctctgagttcgagactagttagggacagccagtgctacag 123
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 903 agaggaaaaaacagggggacctctgagttcgaggctagttagggacagccagtgctacag 844

                                                                       
Query: 124 agagaaaccttgtcttaaaaaaataaaacaaaacaaagcaaaacaacaaaaacaaaaaag 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 843 agagaaaccttgtcttaaaaaaataaaacaaaacaaagtaaaacaacaaaaacaaaaaag 784

                                                                       
Query: 184 gaatttgctggttccaatgatcccaaagagcaagccggaatcaagagctgggacaaaaac 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaatttgctggttccaatgatccaaaagagcaagccggaatcaagagctgggacaaaaac 724

                                                                       
Query: 244 ttggacccagagtaaagaccttgctatgtgctatgattgtcctaccagggacaatcctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttggacccagagtaaagaccttgctatgtgctatgattgtcctaccagggacaatcctga 664

                                                                       
Query: 304 tggatccaaatgttagcttcttgtcactgggggtcttggacacaagcctgggaaccatga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tggatccaaatgttagcttcttgtcactgggggtcttggacacaagcctgggaaccatga 604

                                                                       
Query: 364 tgccaagaaagatgggttgtggattccagaagcaaattcttccagaaagcaaatatctca 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgccaaggaagatgggttgtggattccagaagcaaattcttccagaaagcaaatatctca 544

                                                                       
Query: 424 aatgaaatacaaccaaactccagcgcattgggggaactgggtctccacgcgtaaaaggat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatgaaatacaaccaaactccagcgcattgggggaactgggtctccacgcgtaaaaggat 484

                                                                       
Query: 484 gaggttgacgagctggacgtagtggtgcgtttggaagggaagaaagagcagaggttcaag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaggttgacgagctggacgtagtggtgcgtttggaagggaagaaagagcagaggttcaag 424

                                                                       
Query: 544 atcattccaggacacagggagttccttagttgagctaagagagctttgtagtgcatgtgg 603
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 423 atcattccaggacacagggagttccttagttgagccaagagagctttgtagtgcatgtgg 364

                       
Query: 604 acgtctcaccgt 615
           || |||||||||
Sbjct: 363 acatctcaccgt 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_k21.g1 MSMg01no502_k21.g1 CHROMAT_FILE:
MSMg01no502_k21.g1 PHD_FILE: MSMg01no502_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:47 2005
         (423 letters)



>mm_chr2_163308899_163309721
          Length = 823

 Score =  754 bits (390), Expect = 0.0
 Identities = 414/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tttaaacagattttcaaagccctatctagtccttaaagttgtattgaggtctaacaattt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttaaacagattttcaaagccctatctagtccttaaagttgtattgaggtctaacaattt 261

                                                                       
Query: 62  aatccagtcttacatacaactatgtgaatcttttacatgtagtcgccagcataatcgcta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 aatccagtcttacatacaactatgtgaatcttttacatgtagtcgccagcataattgcta 321

                                                                       
Query: 122 cccagatcgtgacataaattacgtacagtcgtcatatgaagggatagtggaggactgagg 181
           |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 322 cccagatcatgacataaattacgtacagtcgtcgtatgaagagatagtggaggactgagg 381

                                                                       
Query: 182 atataggtcagtggtcatccattttcctagcatgcatgaagctctgggtctgctcttcag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atataggtcagtggtcatccattttcctagcatgcatgaagctctgggtctgctcttcag 441

                                                                       
Query: 242 cgctgtaaacaaacaaacaaacaaacaaacaaactacatgaaagactggaggggatagac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgctgtaaacaaacaaacaaacaaacaaacaaactacatgaaagactggaggggatagac 501

                                                                       
Query: 302 gcctgatacatcagaaagtgtctgcctgccccaagcacgaatacctgagacaggactccc 361
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 502 gcctgatacatcagaaagtgtctgcctgccccaagtatgaatacctgagacaggactccc 561

                                                                       
Query: 362 agtacccatggagaaatttgggcatggctgtgtttgcctataaccctgtcactggagatg 421
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 562 agtacccatggagaaatttgggcatggctgtgcttgcctataaccctgtccctggagatg 621

             
Query: 422 ca 423
           ||
Sbjct: 622 ca 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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