Query= MSMg01no502_m18.b1 MSMg01no502_m18.b1 CHROMAT_FILE:
MSMg01no502_m18.b1 PHD_FILE: MSMg01no502_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
(667 letters)
>mm_chr2_86193283_86194349
Length = 1067
Score = 1176 bits (608), Expect = 0.0
Identities = 647/660 (98%), Gaps = 2/660 (0%)
Strand = Plus / Plus
Query: 8 aattctttgcct-tcatcttcatattgtctactgtgacagaggctagcaggcatgaacta 66
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aattctttgccaatcatcttcatattgtctactgtgacagaggctagcaggcatgaacta 267
Query: 67 gttcagtctactctacatgatattaaaaaacacacaaataagaaaaacaataatttcaca 126
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gttcagtctactctacatggtattaaaaaacacacaaataagaaaaacaataatttcaca 327
Query: 127 ggctgactttattgaggtataccttgcattgccgtggctatatggcaagggctgtgttct 186
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggctggctttattgaggtataccttgcattgccgtggctatatggcaagggctgtgttct 387
Query: 187 caaataatgtttagcgactggaaagaggtttacttatataataaaaattacttgtgattg 246
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 388 caaatattgtttagagactggaaagaggtttacttatataataaaaattactcgtgattg 447
Query: 247 ctaggtatcatgggtgtgggagaagcatggaatgcgagtatgatagggtcatatgacagc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctaggtatcatgggtgtgggagaagcatggaatgcgagtatgatagggtcatatgacagc 507
Query: 307 catctgaaactgacttgcctttagtaagcattggaaagccaagttgtgggtgaatctact 366
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 508 catctgaaactgacttgcctttaggaagcattggaaagccaagttgtgggtgaatctact 567
Query: 367 gacttggcaaatacactggtttccaaaacaagagtgaagtctatctgggacatagataat 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gacttggcaaatacactggtttccaaaacaagagtgaagtctatctgggacatagataaa 627
Query: 427 ttatgtttaccattatgattatcctacatctgttttgaaaatttcacttagacttaaaac 486
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 628 ttatgtttaccattatgattatcccacatctgttttgaaaatttcacttagacttaaaac 687
Query: 487 tttatactttctttgacagcttataaacaaccttactttaaattctttcattttattttt 546
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 688 tttatactttctttgacagcttataaacaaccttactt-aaattctttcattttattttt 746
Query: 547 tcttttatttttgaacttgtaatataattatatcatttctcactactttttccttcctct 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcttttatttttgaacttgtaatataattatatcatttctcactactttttccttcctct 806
Query: 607 aacctctcacattttcctcctctttctctctttctcaaattcattacctgattttcatta 666
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 807 aacttctcacattttcctcctctttctctctttcttaaattcattacctgattttcatta 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_m18.g1 MSMg01no502_m18.g1 CHROMAT_FILE:
MSMg01no502_m18.g1 PHD_FILE: MSMg01no502_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
(601 letters)
>mm_chr2_86352107_86353107
Length = 1001
Score = 1098 bits (568), Expect = 0.0
Identities = 596/610 (97%), Gaps = 10/610 (1%)
Strand = Plus / Minus
Query: 1 agtaatttcttaggcaaatgaatggaacttgaaaatatcacactgagtgaggcaacccaa 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 agtaagttcttaggcaaatgaatggaacttgaaaatatcacactgagtgaggcaacccaa 748
Query: 61 tcacaaaagaacacacatggtatgcacttacagataagtggattttagcccaaagtgagg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 747 tcacaaaagaacacacatggtatgcactcacagataagtggattttagcccaaagtgagg 688
Query: 121 aatagcaaagaggatttgtgatgtcgaattttttttcagtcagagcttgcagtttactaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aatagcaaagaggatttgtgatgtcgaattttttttcagtcagagcttgcagtttactaa 628
Query: 181 ttagcaagtttttgaaatgaagtattattaagttttagtatttaattttatgctgtttat 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 627 ttagcaagtttttgaaatgaagtattattaagttttagtatttaattttacgctgtttat 568
Query: 241 ttgtgtattgcataatatatttggtgggtaagcatgttctttaccaaaaaatgcccaagg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 567 ttgtgtattgcataatatatttggtgggtaagcatgttctttaccaaaaaatacccaagg 508
Query: 301 ctttggctttgtcaagtgcaggaaatgacaaattttgattatttatatgcgttctaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctttggctttgtcaagtgcaggaaatgacaaattttgattatttatatgcgttctaaaca 448
Query: 361 ttgtattttcatagaattttgtaaccgtttaagacaattgaaaatatttattccagctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttgtattttcatagaattttgtaaccgtttaagacaattgaaaatatttattccagctag 388
Query: 421 atggaactacactatggtattttgtacccgagtgcagcatatgtatagagtgtagctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggaactacactatggtattttgtacccgagtgcagcatatgtatagagtgtagctttt 328
Query: 481 gtttagttttgttttgttttgatttcc--------atttatcttttcaatttatatccca 532
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 gtttagttttgttttgttttgatttccattagctaatttatcttttcaatttatatccca 268
Query: 533 atttcaccctcactctctcctctcctcccagtcccaccctctcaccccttatna-ccctc 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 267 atttcaccctcactctctcctctcctcccagtcccaccctctcaccccttat-acccctc 209
Query: 592 tcccttcctt 601
||||||||||
Sbjct: 208 tcccttcctt 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
