CAATTTTTTTTTCTATATTGGTGGCCGCTAACGACTCACATCTCCAGCAA
ACGGCGGAATTCTCCTCTTTCCCATACCTAGCAACAACCAGGTAGGCCTG
ATCAAATATAAAAGGGGCTGCTTGCCTACTCCTCTCTCTCTTACTCCTGC
TTTCCCCTTGCTTCTCTCTTGCCCTCTTAGGCTCTTCCTTTCCCCCTTCC
CTTGTCCCCTCTCTCCACATGGTCATAGCTGGTCTCTACTTCTCTACTTT
CTCCCTCTCACTGCCTTTCTTTTCCTCTACTACCCTCTTAACTCCCCTTC
CCATGCCCTGAATAAACTCTATTCTATACTATACCATTGTGTGGCTGGTC
CCTCAGGCACAGTCCTGCTTAGGCAGCCCCATCTCCCCTACCTCACCACA
CTCCCAAAGAATATATTCTTATACCTCTTTATCTTTTTATAAGCACATTA
CAGAGTATACAGGACTCTGATACAATTGGCCATGATGAGCAACTTGCTCG
TGAGAGCCTTGCAGTTTCGACTAAATGAGCCAAGATTTTGTTTTCTTGCT
TTGCAATCATTTGCAATAGAACCAGCCTTTATTAATACAGTGGTCATGAT
CCCAATTGCTTATCAAGAGGTACAAAATCACATCAGCTAATCTAGCTTCC
TAAGAAGTATCATTTTCACCACACCTAACTCTCCCTGTATTTTTTACAGG
TTAGGAT

CATGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCTGCTCATCCATGCTTAGAAAGGT
GAAATAAAAAATAAGCCGTTGTTCTTGCTCTCACAGAAGCAATTGCAGGT
TTTATGAGGGAAACAATGAACGTGTCACCCTGGATTTGGCAGGAGGAAAG
AGCTGGGAGTATATAAATTGTCTTTTGGGTGCCAACTGTTACGCAGCAGA
ATTGTTTATATTAGTAAAATCCTCTGGTTGTAAGTTATGTAAATTGTATT
TTTTTTCCTATACAGTGTTTTATGATGGAAAGGGGGGCTAGGGAATGTGT
ACTAAATCTGAAATGGTCTCATGCTTAAATACCGCAATGTGGTAGACAGT
TAATCTTCCAAACAGATAGCGAATGCAGGTAACTGCTTTATTACCATCAA
CATATGTCTCTCACTATTCTGACTGCTACCTTGGGATTAGTTTGCAAGAG
CTATCTCGGCTGTGGGGGGAAAAATCACACGGATTTGACCAGCATTGATG
AGCATTAAAACTTACCTCTGATGATTACAGTGCGGTCTGACAGGACCTAT
CACGAGAGGGGTTAGGAAGCTGACTGTGTATCTTTGGAGGACACCTTTAT
AAACCAGAGAGTCAGGAGATTGCTTTATGAATTTCTAATGCTGCCCGACC
CA

Query= MSMg01no503_p14.b1 MSMg01no503_p14.b1 CHROMAT_FILE:
MSMg01no503_p14.b1 PHD_FILE: MSMg01no503_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:25 2005
         (580 letters)



>mm_chr2_141397210_141398189
          Length = 980

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Minus

                                                                       
Query: 162 tctactttctccctctcactgcctttcttttcctctactaccctcttaactccccttccc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 tctactttctccctctcactgcctttcttttcctctactaccctcttaactccccttccc 921

                                                                       
Query: 222 atgccctgaataaactctattctatactataccattgtgtggctggtccctcaggcacag 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 atgccctgaataaactctattctatactataccattgtgtggctggtccctcaggcacag 861

                                                                       
Query: 282 tcctgcttaggcagccccatctcccctacctcaccacactcccaaagaatatattcttat 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tcctgcttaggcagccccatctcccctacctcaccacactcccaaagaatatattcttat 801

                                                                       
Query: 342 acctctttatctttttataagcacattacagagtatacaggactctgatacaattggcca 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acctctttatctttttataagcacattacagagtatacaggactctgatacaattggcca 741

                                                                       
Query: 402 tgatgagcaacttgctcgtgagagccttgcagtttcgactaaatgagccaagattttgtt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgatgagcaacttgctcgtgagagccttgcagtttcgactaaatgagccaagattttgtt 681

                                                                       
Query: 462 ttcttgctttgcaatcatttgcaatagaaccagcctttattaatacagtggtcatgatcc 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcttgctttgcaatcatttgcaatagaaccagcctttattaatacagtggtcatgatcc 621

                                                                      
Query: 522 caattgcttatcaagaggtacaaaatcacatcagctaatctagcttcctaagaagtatc 580
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caattgcttatcaagaggtacaaaatcacatcagctaatctagcttcctaagaagtatc 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no503_p14.g1 MSMg01no503_p14.g1 CHROMAT_FILE:
MSMg01no503_p14.g1 PHD_FILE: MSMg01no503_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:25 2005
         (343 letters)



>mm_chr2_141260510_141261252
          Length = 743

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgctcatccatgcttagaaaggtgaaataaaaaataagccgttgttcttgctctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgctcatccatgcttagaaaggtgaaataaaaaataagccgttgttcttgctctcac 260

                                                                       
Query: 61  agaagcaattgcaggttttatgagggaaacaatgaacgtgtcaccctggatttggcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagcaattgcaggttttatgagggaaacaatgaacgtgtcaccctggatttggcagga 320

                                                                       
Query: 121 ggaaagagctgggagtatataaattgtcttttgggtgccaactgttacgcagcagaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagagctgggagtatataaattgtcttttgggtgccaactgttacgcagcagaattg 380

                                                                       
Query: 181 tttatattagtaaaatcctctggttgtaagttatgtaaattgtattttttttcctataca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tttatattagtaaaatcctctggttgtaagttatgtaaattgtattttttttcctagaca 440

                                                                       
Query: 241 gtgttttatgatggaaaggggggctagggaatgtgtactaaatctgaaatggtctcatgc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttttatgatggaaaggggggcttgggaatgtgtactaaatctgaaatggtctcatgc 500

                                                      
Query: 301 ttaaataccgcaatgtggtagacagttaatcttccaaacagat 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaataccgcaatgtggtagacagttaatcttccaaacagat 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)