BAC Information

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BAC

Clone NameMSMg01-504B08
Chromosome2 (Build37)
Map Location 72,337,890 - 72,338,339
singlet/doubletsinglet
Overlap genenone
Upstream geneMetapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7
Downstream geneLOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504B08.T7 (MSMg01no504_b08.b1)MSMg01-504B08.TJ (MSMg01no504_b08.g1)
ACCAG579047AG579048
length746742
length of high quality
(start - end)
692 (51 - 742)453 (72 - 524)
definitionCHROMAT_FILE: MSMg01no504_b08.b1 PHD_FILE: MSMg01no504_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:34 2005CHROMAT_FILE: MSMg01no504_b08.g1 PHD_FILE: MSMg01no504_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAATCTTCCAGCCAAAGGGTAACTAGTCAGCTATTAGGA
TAGATTCATAGTTTGGGTCATTGCACATTCCAAACCAAGTGAGTCACCAA
ATAAATTGTCGAAAGTTCTGCCCTCTGGGAGCATTTTCCTGAAATGCTAT
TCTTTGGGGTCATTCCTAGTGGGGATAGAACACTTAAGCGCTCTCATCCA
TTTGCTACTAACGTATCACACAGAACCACTTATAATTTGAGCTCATGAAT
GCATGCATGCTTGCCCTCTGCTCCCTTTTTCACTCTTCCACAGTTCACAG
TCTTGCTTAGGGAATGGTGACACCCACAGTGGGTAGATATTCCCACCTTG
ATTAATGTAATCAACACAATCCTTTACAGACATGCCCATAGGCCAATCTG
ATGTGGACAATCCCTCATGGAGACTCTCTTCCCTTGGATTCTAGATTATG
TCAAGTTAGTAAAACTAACCATAAGAGGTAGATACATATGTAGCTTATAC
ATGATTAGCCACTTCAACAGGCATATATCCCTAAGCCTGTGTATTTCCTC
CTCAATATTATGCCAGGGGAATTCTGGCATCTCAATCTCATGATATGTTG
GCTACACTGAGCTCAAGTTTCAGTCAACTAGCCATACAAACTGTTTGAGA
CACTTTAGTTTCTAGAGCAACACATTTTACTTTAACTCTGGAATCT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAAATTAAACAAAAACCCTCTTGGTGT
TACAAGTGGGAAGACAATAGCAGCCACTGCCTGAATAGATAGCTGTCACT
CTAGAAGACAGCCTGCCGGCAGCTCTGAGAGCTTACTTTTGAGAGGTGCT
AAAGCTGGAGTTGGAGAAGGTGTTTTCCCTGGGTACCACATTCCGGGTGG
GAAAGCTTCACCTGGCTTGTGTGTTGGGTAGTTTGGTGGGGTAGGGAGGT
CACTCATCTCAGGCCGCCATTCTGCCTCAGAAAAACAAAGGCCTCAGGGG
ATGAACAGACAGAGGCAGGTCATGTGGTAAGGGCGCATTAATCCAGAAAA
CTGCACATCAAAGCTGTGTACACTCACTCCTCCCTAAGATTTCACGGTTC
CATGGAATACTCCTGCCCTCAGTTCAGTGGTTTTTGCCCCTGCCTCGTTT
TTTTTTTTTTTTTTTTTTTTTAATGTGCAGACTCTCAATCAAAATCAATT
GCTCTCATTCTTAAGAAACTTAGCTCGTGCTATAAACGAAAGAGAAAAAC
TCTAGCCAGTACTGATCTTTCAGAAGAGGAAAAGCCCCTCAAATACTTTA
TGGGGGAAAAAAAGGAGGGGAAAAAAAACCCCCCCTGGGTTTGCCTTTGT
GCCGGGGGNNGGCCATGTTCCGCAATTGTCTTCTAAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_b08.g1 MSMg01no504_b08.g1 CHROMAT_FILE:
MSMg01no504_b08.g1 PHD_FILE: MSMg01no504_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:34 2005
         (453 letters)



>mm_chr2_72337714_72338566
          Length = 853

 Score =  816 bits (422), Expect = 0.0
 Identities = 443/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaattaaacaaaaaccctcttggtgttacaagtgggaagacaatagcagccactgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttaaaattaaacaaaaaccctcttggtgttacaagtgggaagacaatagcagccactgcc 567

                                                                       
Query: 61  tgaatagatagctgtcactctagaagacagcctgccggcagctctgagagcttacttttg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 566 tgaatagatagctgtcactctagaagacagcctgcaggcagctctgagagcttacttttg 507

                                                                       
Query: 121 agaggtgctaaagctggagttggagaaggtgttttccctgggtaccacattccgggtggg 180
           ||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||
Sbjct: 506 agaggtgctaaagctggcgctggagaaggtgttttccctgggtaccacgttccgagtggg 447

                                                                       
Query: 181 aaagcttcacctggcttgtgtgttgggtagtttggtggggtagggaggtcactcatctca 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 aaagcttcacctggcttgtgtgttgggtagtttggtggggtggggaggtcactcatctca 387

                                                                       
Query: 241 ggccgccattctgcctcagaaaaacaaaggcctcaggggatgaacagacagaggcaggtc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggccaccattctgcctcagaaaaacaaaggcctcaggggatgaacagacagaggcaggtc 327

                                                                       
Query: 301 atgtggtaagggcgcattaatccagaaaactgcacatcaaagctgtgtacactcactcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtggtaagggcgcattaatccagaaaactgcacatcaaagctgtgtacactcactcct 267

                                                                       
Query: 361 ccctaagatttcacggttccatggaatactcctgccctcagttcagtggtttttgcccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccctaagatttcacggttccatggaatactcctgccctcagttcagtggtttttgcccct 207

                                         
Query: 421 gcctcgtttttttttttttttttttttttt 450
           ||||||||||||||||||||||||||||||
Sbjct: 206 gcctcgtttttttttttttttttttttttt 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)