BAC Information

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BAC

Clone NameMSMg01-504C16
Chromosome2 (Build37)
Map Location 174,731,837 - 174,732,363
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504C16.T7 (MSMg01no504_c16.b1)MSMg01-504C16.TJ (MSMg01no504_c16.g1)
ACCAG579111AG579112
length774792
length of high quality
(start - end)
623 (47 - 669)527 (75 - 601)
definitionCHROMAT_FILE: MSMg01no504_c16.b1 PHD_FILE: MSMg01no504_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:41 2005CHROMAT_FILE: MSMg01no504_c16.g1 PHD_FILE: MSMg01no504_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGCGTTTTCCTTTGTGCCCTCCTTGTAATTTAGCTTCTTTGGG
TCTATGGATTGTACCATAGTTGTCCCCTATACTTTATGGCTAAAATTCAC
TTATAAATGAGTATCCTTGAGTCTGGGTTACCTAACCCAGGATAATATTT
TATAGCTGCATCCATTTGTTGTCCTTGTTTTTAATATCTGAGTAATATTC
CATTGTATAAATGAACCACACTTTCTTGTTTTAATTTAATTTTATTGTTT
TATTTATTCACTTTACAGTCCACTCACTGACCACCTCCAAGTCACCCCAT
CCCACAGCCCTTCTTCCATCCCCCCTTACTTTCTCCTCTGATCAGGTGGG
GGCACCTGTGTATTCCTCCCCCACCCAGGCACTTCCAGTCTCTGCAAGGC
TAGGTGCTTCCTCTCCCACTGAGGCCAGACAAAGCGGCCCAGCTAGTAGA
ACGTATCCCAAATACAGGCAACCACTTTTGGAATAGCCCCCCACCCCTTT
TCCCGTTGTTTGGGATCCATATGAAGGCCAAGCTGCACATCTGCTACATA
TGAGCTGGGAGACCAAATCCAGCCTGTGTATGTTCTTTAGTTGGCTGGTT
CAGACTCTGGGAATCCCAAAGGTCCAGGTTAGTTGATGCTGTTGGTCTTC
CTGTGGAGTTCCTATCCAATTTGGGGCCCACATCCTTCATCCTATTTTTC
ATAAGAGACCCAAGCTCCACTGTT
NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACAGAGAGGTAGTTGTGAAGCTCAG
ACAGCTGTGTCCCTTTCGAAACAGACCTCTGAGATCCTTTGTGCTGCCTG
TCACATCAGAGGAAGTGTAGGAGGGGGCTGGGGCAGGAAGCATCGTGCAC
AGAGTGCGGCACACACAATGAGGTCTCTAATGGAGCTAATTCCAATCAGG
CCACCATTGTCAGGTGTGTGCTCACAGCCACCCTCAGCAGCAGTGGGCAC
AATGGCAGGCAATGAGCACCAGGAAAAAGATGTTGAGGGGACACAGCAAG
GGGTCACTGCTGGCCCCAGAGTGAGGCCTGGTCCTGGATGACCCCTCAAA
GGCCCTGGGTCCAGGCCAGAGCTGAGCGGTATACACTCTGAGCTTCAATC
TCAGGTCTGTGAGAAGAGAGGCTACATACAGGTATGGCTCTAGTGAAGCC
CTGGGACATGTCTGAGCCATTTGTTGCTTAAGAGCATAAAATCTGTGTTA
TTGTTAGTTAGCCATACTAGGAAGTAAAAGATAAAGTTCCCTGGATTCTA
GAAAATTCTGAGAGAATTGCTCTGTAACTGATGTTTGTTACGTCAGCTGT
AACAAAGTGCCGGATAAAAAGTGACTTAAGAAAGGAAGGTTGTGGCTNAG
CAATGGTGGCACATGCCTGGTATCCCNCACTTGGGTAGCGGAGGCAGAAG
CAGGCAAATTTCTGAGTTTGAAGCCAGTCTGGGCTACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_c16.g1 MSMg01no504_c16.g1 CHROMAT_FILE:
MSMg01no504_c16.g1 PHD_FILE: MSMg01no504_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:41 2005
         (527 letters)



>mm_chr2_174731637_174732563
          Length = 927

 Score = 1011 bits (523), Expect = 0.0
 Identities = 526/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagagaggtagttgtgaagctcagacagctgtgtccctttcgaaacagacctctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagagaggtagttgtgaagctcagacagctgtgtccctttcgaaacagacctctgaga 260

                                                                       
Query: 61  tcctttgtgctgcctgtcacatcagaggaagtgtaggagggggctggggcaggaagcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctttgtgctgcctgtcacatcagaggaagtgtaggagggggctggggcaggaagcatc 320

                                                                       
Query: 121 gtgcacagagtgcggcacacacaatgaggtctctaatggagctaattccaatcaggccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gtgcacagagtgcggcacacacaatgaggtctctaatggagctaatttcaatcaggccac 380

                                                                       
Query: 181 cattgtcaggtgtgtgctcacagccaccctcagcagcagtgggcacaatggcaggcaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgtcaggtgtgtgctcacagccaccctcagcagcagtgggcacaatggcaggcaatg 440

                                                                       
Query: 241 agcaccaggaaaaagatgttgaggggacacagcaaggggtcactgctggccccagagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaccaggaaaaagatgttgaggggacacagcaaggggtcactgctggccccagagtga 500

                                                                       
Query: 301 ggcctggtcctggatgacccctcaaaggccctgggtccaggccagagctgagcggtatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctggtcctggatgacccctcaaaggccctgggtccaggccagagctgagcggtatac 560

                                                                       
Query: 361 actctgagcttcaatctcaggtctgtgagaagagaggctacatacaggtatggctctagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actctgagcttcaatctcaggtctgtgagaagagaggctacatacaggtatggctctagt 620

                                                                       
Query: 421 gaagccctgggacatgtctgagccatttgttgcttaagagcataaaatctgtgttattgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagccctgggacatgtctgagccatttgttgcttaagagcataaaatctgtgttattgt 680

                                                          
Query: 481 tagttagccatactaggaagtaaaagataaagttccctggattctag 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagttagccatactaggaagtaaaagataaagttccctggattctag 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)