BAC Information

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BAC

Clone NameMSMg01-504P02
Chromosome2 (Build37)
Map Location 85,399,968 - 85,400,604
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik
Downstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504P02.T7 (MSMg01no504_p02.b1)MSMg01-504P02.TJ (MSMg01no504_p02.g1)
ACCAG579700AG579701
length7411,257
length of high quality
(start - end)		638 (71 - 708)---
definitionCHROMAT_FILE: MSMg01no504_p02.b1 PHD_FILE: MSMg01no504_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:43 2005CHROMAT_FILE: MSMg01no504_p02.g1 PHD_FILE: MSMg01no504_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCTTCTTGCTTTTAGCCACTGAACCATTTACCCATCCT
ACCATTTACAAATATGCTATGATACATCACATCCTGTTGTTTGATATTTT
GTGAAACATATAGAAACAGCTGGACTGGTCCCCCTTCCAGAAATTCTTCC
ACAAGAGCATTCATTAATCACATCATAAAAGATTAACATTCATTAATCAC
ATCATAAAAGAAACCAGAAAACTAACCGATTATAAATATCTCTTGACATA
AAACATACTTTTGCTTTAAAGAGCTACTTAAAAATTGAGTGATTGGTAAA
ATATCTCACAGACATATTCACATTCGAAATGTATCAAGTGGATAAAATCC
CATGGTTAGCAATGTTATCCTAAACACAATGTCAGAAACTGACAGACAGC
AGGTGAGTCACACAGAAGTTAAAGGAGGAGGCCTGGATACTTTCACAGTA
ACTTCAAACAGTATCTATGGACCTTTGTGACCATTAGCTGATGATGTTAG
AACCTGTTAAGAATCGTGCACACTTATCTAATATAAGTTGGGATCCACTT
TATGAGGAAGTAAATCTTATATAATTTATATTTAGTTCATTGTGACAACC
GGGAACTCTGCCACCAAACAGCCACGTGATCATGAGTTGGGAGAAGTATA
TGAAAAGCTCACTTCCTTGTTTTTAAAAGTGAGAAGTTAGN

CGGTGGATGAAGGGAACGGGCTCGCGGTGGTGCGGCTCGTGTTTTCGGCG
CGGCGGCGGCCGTGTGAGCACAGGGCGCCGGCGTGTGGTCTAGACGGGGG
TGGCGCCTGTGCCGTATGTGTGGCGCGCNGTGCGTCCCGCGCCGCGCGTA
GTATGCGTCACAGTGATTTTTCAGATGCGCCTGTGGTCATGGCTAAATCT
AGGAGTTCACCGCGACCACCGTGGTGACGTCAGAGCAGGGGGAGGCGCGG
AACCGCGACGGGATTGCGTGAGATCGGGGCCTCATGTCCCCGCAGAGCGA
CATAATCCGTATTCCTCATTATATACCTGTTCTGTTTACTGTAGATCGGG
TGGTATTACGTTACATATGTCGCCAGCGAAATATACCTCGCACGTCGGTG
AGTGTGGTGAGTGGCTGGGTGCGGCGGAATTCGAGCGATGGCGAGACGAC
GGGGAGGGTGTATAATGGTGCGCGGATACCTATATGCGGNCTGCGGCGCG
CGGCTGCGGTGAAGATGAGGGCGTAGCGCACGCCGCACGGCGGTGTATCG
CGAGCGCGCGGTATTGGTGTTGCTTCGCCTCGTGGCGCGCAGTGGGTATG
TACGCTCGGTGTTTCGATTTTGCAGCGTGCGCGTGGTGTTGGGTGGTTGT
TTAATTGCGAGCGGGTCAGCACGTCTGACGGGGCGATTGTGTATATGTAT
CGCGCGACGCGTCGCGCTTCCACGCCCTCCGCCTCAGTTTGTTTCTTACG
ACGTACGCACAACCATATCCACTTTAATGTAGGCTGAGTGGTCGTAATCG
TGCACTCCACCTAACATTTAGTTATGCGACTCTCTAGTCGTGCTGCTCCC
GACGCTATATATGTACGATGTACACGTCATCTCCGCCGCGCCCCGTATTG
ATATACGACATTTAATTAGATATTTATTACCGACCCGCCGAGACGCGCGC
GCGNCATGATACGGGTACGTATATATTGTGTTCGCCGCGTGAAATATGAG
CGCACTATATTCGAGCGCACTACAACGACGTGAAAGCAGAGATACGGACG
CGTAGCATGCGGTAGACACGCGTATAGATCCTCTGCGACTAGACATTATA
TATCGACGCAGCGCGGCGGCGACGCTCTCGTACAGAAGCGTAGCAGGTGT
GTCGACTGCATCGCTGAACGTACTGCGAGCATCNGAGTCACCAGAGAAGA
AAGACAATATATATAATAAGATAGATATAGACACACGATTACCCCGCAGT
CGCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_p02.b1 MSMg01no504_p02.b1 CHROMAT_FILE:
MSMg01no504_p02.b1 PHD_FILE: MSMg01no504_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:43 2005
         (638 letters)



>mm_chr2_85399768_85400805
          Length = 1038

 Score = 1147 bits (593), Expect = 0.0
 Identities = 626/637 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttagccactgaaccatttacccatcctaccatttacaaatatgctatgatacatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttagccactgaaccatttacccatcctaccatttacaaatatgctatgatacatcac 260

                                                                       
Query: 61  atcctgttgtttgatattttgtgaaacatatagaaacagctggactggtcccccttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctgttgtttgatattttgtgaaacatatagaaacagctggactggtcccccttccag 320

                                                                       
Query: 121 aaattcttccacaagagcattcattaatcacatcataaaagattaacattcattaatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattcttccacaagagcattcattaatcacatcataaaagattaacattcattaatcac 380

                                                                       
Query: 181 atcataaaagaaaccagaaaactaaccgattataaatatctcttgacataaaacatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcataaaagaaaccagaaaactaaccgattataaatatctcttgacataaaacatactt 440

                                                                       
Query: 241 ttgctttaaagagctacttaaaaattgagtgattggtaaaatatctcacagacatattca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ttgctttaaagagctacttaaaaattgagtgattggtaaaatatctcacagacacattca 500

                                                                       
Query: 301 cattcgaaatgtatcaagtggataaaatcccatggttagcaatgttatcctaaacacaat 360
           ||||||||||||| |||||||||||||||||| ||| |||||||||||  ||||||||||
Sbjct: 501 cattcgaaatgtaacaagtggataaaatcccacggtaagcaatgttattttaaacacaat 560

                                                                       
Query: 361 gtcagaaactgacagacagcaggtgagtcacacagaagttaaaggaggaggcctggatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 gtcagaaactgacagacagcaggtgagtcacacagaagttaaaggaggaggcctggataa 620

                                                                       
Query: 421 tttcacagtaacttcaaacagtatctatggacctttgtgaccattagctgatgatgttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcacagtaacttcaaacagtatctatggacctttgtgaccattagctgatgatgttag 680

                                                                       
Query: 481 aacctgttaagaatcgtgcacacttatctaatataagttgggatccactttatgaggaag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aacctgttaagaatcgtgcacacttatctaatataagttgggatccactttatgagcaag 740

                                                                       
Query: 541 taaatcttatataatttatatttagttcattgtgacaaccgggaactctgccaccaaaca 600
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 tacatcttatataatttatatttagttcactgtgacaaccgggaactctgccaccaaaca 800

                                                
Query: 601 gccacgtgatcatgagttgggagaagtatatgaaaag 637
           |||||||||||||| ||||||||||||||||||||||
Sbjct: 801 gccacgtgatcatgggttgggagaagtatatgaaaag 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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