Query= MSMg01no505_f19.b1 MSMg01no505_f19.b1 CHROMAT_FILE:
MSMg01no505_f19.b1 PHD_FILE: MSMg01no505_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:15 2005
(586 letters)
>mm_chr2_35614850_35615835
Length = 986
Score = 944 bits (488), Expect = 0.0
Identities = 551/586 (94%), Gaps = 24/586 (4%)
Strand = Plus / Plus
Query: 1 gatgacagagagcagttttgtcaaacaactttacacttaagtttaacaggctggaagttc 60
|||||||||||||||||||||||||| || ||||||||| | ||| |||||||||
Sbjct: 208 gatgacagagagcagttttgtcaaactaccttacactta-g------aggatggaagttc 260
Query: 61 caaccctgggtgtcagcatggtcaggctcttgggagtccaccttcttccttaagtgcctt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccctaggtgtcagcatggtcaggctcttgggagtccaccttcttccttaagtgcctt 320
Query: 121 caaaggtcagggagtgaacgggcaagtcctctgctgtcttttctgacgaggggactagca 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 caaaggtcagggagtgaacgggcaagtcctctgctgtcttttctgactaggggactagca 380
Query: 181 caattagaaaggggactcatttaaccccagccacttccttagagaccctatctctttgat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattggaaaggggactcatttaaccccagccacttccttagagaccctatctctttgat 440
Query: 241 ccataatccatcctgaatgaggtgggggaagggtgctgtgatccagtccagagcttcagt 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ccataatccatcctgaatgaggtgggggaagggtgctgtgatccagtctagagcttcag- 499
Query: 301 tctgaagctgaggcagccctgccatgtgggaatactctttccatctccctaagtctctga 360
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ----------------ccctgccatgtgggaatactctttccatctccctaagtctctga 543
Query: 361 gtcccagagccatttaggaagaagttaaaaccacctcacctctctccctgcccctccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtcccagagccatttaggaagaagttaaaaccacctcacctctctccctgcccctccacc 603
Query: 421 tgccgcagggaggcccctcaaggccaggcttgggcactggaaacatcttgggatatcagt 480
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 604 tgccgcagggaggcccctcaaggccaggcttgggcactggaaacatcccgtgatatcagt 663
Query: 481 gtctttacacgcgtgttatagccaacgtgacaaacatcattggctctcggttactgagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtctttacacgcgtgttatagccaacgtgacaaacatcattggctctcggttactgagtc 723
Query: 541 tttttacgtgaaaactctgagataaaaactgcccgcacattattca 586
||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 724 tttttacgtgaaaactctgagataaaaactgcctgcacattattca 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_f19.g1 MSMg01no505_f19.g1 CHROMAT_FILE:
MSMg01no505_f19.g1 PHD_FILE: MSMg01no505_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:15 2005
(545 letters)
>mm_chr2_35777030_35777978
Length = 949
Score = 810 bits (419), Expect = 0.0
Identities = 447/459 (97%), Gaps = 6/459 (1%)
Strand = Plus / Minus
Query: 37 aatctcgagcctctcagttcttcccccagttccttcctctgcctggatgtcccgcctttc 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 aatctcgagcctctcagttcttcccccagttccttcctctgcctggatgtcccgcctttc 890
Query: 97 ctatcccgcctcagctgtaggccgtcggctctttattaaactgattagaggtaacagaga 156
|||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 889 ctatcccgcctcagctataggccgtcagctctttattaaactgatcagaggtaacagaga 830
Query: 157 agaatgtttacaaaatacgatgcaggtgctgagtaaatagaataacaatctccaagtcca 216
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 829 agaatgtttacaaaatacgatgcaggtgctgagtaaacagaataacaatctccaagtcca 770
Query: 217 ggcagagctcagctctctgctggtgtataaatcaacatttgaatagtacaaagacaacct 276
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 769 ggcagagctcagctctctgctggtgcagaaatcaacatttgaatagtacaaagacaacct 710
Query: 277 ttgcacaatgtacaagggattagaccaacaaacaaatattagagaattaaattcatgaga 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttgcacaatgtacaagggattagaccaacaaacaaatattagagaattaaattcatgaga 650
Query: 337 ttatgtc-----atgtatggtttaaaattattttagtcaggtagccatctctagatgaca 391
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttatgtcaagttatgtatggtttaaaattattttagtcaggtagccatctctagatgaca 590
Query: 392 aagacagcagatcacatgcactgagtaagatttttagcaatctaaagtcacagaatggaa 451
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 589 aagacagcagatcacatgcactgagtaaga-ttttagcaatctaaagtcacagaatggaa 531
Query: 452 gcctgtgctatcttgaaataagatgcagttgtttgattt 490
|||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gcctgtgctatcttgaaataagatgcagttgtttgattt 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 949
Length adjustment: 10
Effective length of query: 535
Effective length of database: 939
Effective search space: 502365
Effective search space used: 502365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
