BAC Information

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BAC

Clone NameMSMg01-506F08
Chromosome2 (Build37)
Map Location 110,692,055 - 110,692,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506F08.T7 (MSMg01no506_f08.b1)MSMg01-506F08.TJ (MSMg01no506_f08.g1)
ACCAG580754AG580755
length747754
length of high quality
(start - end)		642 (55 - 696)410 (84 - 493)
definitionCHROMAT_FILE: MSMg01no506_f08.b1 PHD_FILE: MSMg01no506_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:30 2005CHROMAT_FILE: MSMg01no506_f08.g1 PHD_FILE: MSMg01no506_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTATTCTTTTCTTTTTCTTTCCATTTTTTATTAGGTA
TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCAC
CCACCCCCACTCCCCTACCTGCCCACTCCCGCTTTTTGGCCCTGGCGTTC
CCCTGTTCTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCC
AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG
AGCTCTGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGC
AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC
CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA
GGCCCTGGCATAGTCTCACATGAGACAGCTACATCTTGGTCCTTTCGATA
AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGG
GGTGGATCCTTGGATAAGGCAGTCTCTACATGGTCCATCCTTTCATCTCA
GCTCCAAACTTTGTCTCTGTAACTCCTTCCAAGGGTGTTTTGTTCCCACT
TCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTTTTCTTGAGTT
TCATGTGTTTAGGAAATTGTATCTTATATCTTGGGTATCCTAGGTTN

NNTTTTCCGATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTCCTTATTACCAA
TACTCTGCATTAATAAACCAGGAAAAGACAATCTTTTCCTAAATGCTTAT
AAAAGCAGCTTGTCTCATTTTCTCTAGAATTTTTCTTCAATTAAGTCTAA
TAATTTCTACCACTTGTAGATTTATGAGAATGGCTTTTTTTTTGGTATGG
TTGTTTGTGGTACTTAATTGTTTCTGAATATTTTTCAGCCACACACATGT
AGTAAAGATGATAAAATTGTATTAATCTTAATGATTATGACTGTTGATAA
TATAAATGTATATTTCAACTAAAGTAAATATTGTATTTTCCTGAATTTAA
TTAAGTTTTAATATTATTATTATCATCTCTTTCTCCCTTCCCCCCTGTTT
GTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATNNNNNNNN
NNNNNNNNNNNNNTTNNNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTT
TTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNNNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTNTTTTN
TTTTTTTTTTNTTTTTTTTTTTTTTTTTCGTTTTTTTTTTNTTTTTTTTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_f08.g1 MSMg01no506_f08.g1 CHROMAT_FILE:
MSMg01no506_f08.g1 PHD_FILE: MSMg01no506_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:30 2005
         (410 letters)



>mm_chr2_110691855_110692664
          Length = 810

 Score =  748 bits (387), Expect = 0.0
 Identities = 402/407 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattccttattaccaatactctgcattaataaaccaggaaaagacaatcttttcctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattccttattaccaatactctgcattaataaaccaggaaaagacaatcttttcctaaa 260

                                                                       
Query: 61  tgcttataaaagcagcttgtctcattttctctagaatttttcttcaattaagtctaataa 120
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tgcttattaaagcagcttgtctcattttctctagaattttccttcaattaagtctaataa 320

                                                                       
Query: 121 tttctaccacttgtagatttatgagaatggctttttttttggtatggttgtttgtggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctaccacttgtagatttatgagaatggctttttttttggtatggttgtttgtggtac 380

                                                                       
Query: 181 ttaattgtttctgaatatttttcagccacacacatgtagtaaagatgataaaattgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattgtttctgaatatttttcagccacacacatgtagtaaagatgataaaattgtatt 440

                                                                       
Query: 241 aatcttaatgattatgactgttgataatataaatgtatatttcaactaaagtaaatattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcttaatgattatgactgttgataatataaatgtatatttcaactaaagtaaatattg 500

                                                                       
Query: 301 tattttcctgaatttaattaagttttaatattattattatcatctctttctcccttcccc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tattttcctgaatttaattaagttttaatattattattatcatctctttctcccttgccc 560

                                                          
Query: 361 cctgtttgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt 407
           ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 561 cctgtttgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgtgtgt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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