BAC Information

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BAC

Clone NameMSMg01-506I20
Chromosome2 (Build37)
Map Location 143,390,169 - 143,610,637
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I20.T7 (MSMg01no506_i20.b1)MSMg01-506I20.TJ (MSMg01no506_i20.g1)
ACCAG580919AG580920
length759758
length of high quality
(start - end)		579 (71 - 649)649 (80 - 728)
definitionCHROMAT_FILE: MSMg01no506_i20.b1 PHD_FILE: MSMg01no506_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:48 2005CHROMAT_FILE: MSMg01no506_i20.g1 PHD_FILE: MSMg01no506_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,390,169 - 143,390,747)(143,609,989 - 143,610,637)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCGCGG
AATTCTTGGCTCTCTCCAAGTCTGAGTTAGTGGCGTTATTATATTGGTAC
CCAGCCTGCGTCTGCAACCTGATGGATGGCTGTGAAGTCTCTTCCCACTC
ATTTTCTCCTTCCTTCTGGAATCGTGACCTTAAGAGAATAAAGTGATAGC
ACAGAAAAACAATGTGTGTGTGCATGCACATGCGTGTGAGTCTATGTGTG
TATGTGTGTGTGCGTGCGCACAAAGGCATGTGTGTGTGAGTCTGTGTGAG
TGTGTATATTATTTACATACATTTGTGTGTAAGTCTGTGAGTGTGTGTGT
GCATGTGTGCGTTTCTAGAAAGAAAGTCATTTAAACATGTATGAGATGCC
TAATATGAGAAGTTTCCTACTGGGGCACTCAGCTGAGTGTTTGAAGACCT
ACCACTGTTTATAATTTCTCAGCTATTTGTAATACTAAACTATTCTTAGA
TATGGAGGAATTCAAGTGTCAGCATCAAATCACTCAGATGTATGGGTGGA
AAGTGCCTTCCCCTGCTGGGAGGCACACAGCATTTCTCTTCCCTTCCCAA
TGGGGCTCCTGCATACACAGTGTTCTCAAACAGCTGACTTGTCAGAGGAC
CGAGATCTAGAGTCTGCACTCCAAAGATAAGAAGCAAAGTAACCAATATC
TGCAGATAAATAGTCCATTAATTTGTGATTGGTCAATGTATCTGTTTATA
CATTGCCCN

NGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCATGTGCCTCTTACAC
CACTAAACCCAACTCTGTGCCTATCTTCCACAGGATCTAAACATAGAGGT
CTATAGGGATGTAGACCCACTTCCACTTGACCCTGCCACTCCATCCACTC
TATATCACTACCACTTCACCCTCTATATCCTACCTCATGGGTGGACCAGG
GCCTTGTGGTGACAGGAAAGTCTTTACCTTGTTCACGCCATCAGCCATGG
CCTGGAGTGTGAGCTCTCGGGGCCCATCAACCGTCTTCCCATTGTCTGTG
GGGCCCCAGCTTGCACTGTAGATGTCGATCAGTTGAGGCATGTGGCTGAT
GGAGGAGGCTTCGATGATGTCTGTCATAAAGGGCTGGTCCAGCATCCGGA
TCCCTGTGTGCAGGTGGGACAAGAAACAAGACTTTGGCACCCTAGCTCTC
AGAAGACATGGGGGTAGAGAAAAGTTTGGGTTCTGGGAGGAGCTGGGGAC
CTTCAGTGCCTTCAGAACACCATGGAGTCTGAGGGTCAAAAATGGTTTTC
AGAGCCGGGTGGTGGTGGCGCATGCCTTTAATTCCAGCACTTGGGAGGCA
GGGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT
TCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAACCCCTCT
CCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i20.b1 MSMg01no506_i20.b1 CHROMAT_FILE:
MSMg01no506_i20.b1 PHD_FILE: MSMg01no506_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:48 2005
         (579 letters)



>mm_chr2_143389969_143390947
          Length = 979

 Score = 1112 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagttagtggcgttattatattggtacccagcctgcgtctgcaacctgatggatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagttagtggcgttattatattggtacccagcctgcgtctgcaacctgatggatggc 260

                                                                       
Query: 61  tgtgaagtctcttcccactcattttctccttccttctggaatcgtgaccttaagagaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaagtctcttcccactcattttctccttccttctggaatcgtgaccttaagagaata 320

                                                                       
Query: 121 aagtgatagcacagaaaaacaatgtgtgtgtgcatgcacatgcgtgtgagtctatgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgatagcacagaaaaacaatgtgtgtgtgcatgcacatgcgtgtgagtctatgtgtg 380

                                                                       
Query: 181 tatgtgtgtgtgcgtgcgcacaaaggcatgtgtgtgtgagtctgtgtgagtgtgtatatt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tatgtgtgtgtgcgtgcgcacaaaggcatgtttgtgtgagtctgtgtgagtgtgtatatt 440

                                                                       
Query: 241 atttacatacatttgtgtgtaagtctgtgagtgtgtgtgtgcatgtgtgcgtttctagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttacatacatttgtgtgtaagtctgtgagtgtgtgtgtgcatgtgtgcgtttctagaa 500

                                                                       
Query: 301 agaaagtcatttaaacatgtatgagatgcctaatatgagaagtttcctactggggcactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagtcatttaaacatgtatgagatgcctaatatgagaagtttcctactggggcactc 560

                                                                       
Query: 361 agctgagtgtttgaagacctaccactgtttataatttctcagctatttgtaatactaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctgagtgtttgaagacctaccactgtttataatttctcagctatttgtaatactaaac 620

                                                                       
Query: 421 tattcttagatatggaggaattcaagtgtcagcatcaaatcactcagatgtatgggtgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattcttagatatggaggaattcaagtgtcagcatcaaatcactcagatgtatgggtgga 680

                                                                       
Query: 481 aagtgccttcccctgctgggaggcacacagcatttctcttcccttcccaatggggctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtgccttcccctgctgggaggcacacagcatttctcttcccttcccaatggggctcct 740

                                                  
Query: 541 gcatacacagtgttctcaaacagctgacttgtcagagga 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcatacacagtgttctcaaacagctgacttgtcagagga 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_i20.g1 MSMg01no506_i20.g1 CHROMAT_FILE:
MSMg01no506_i20.g1 PHD_FILE: MSMg01no506_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:48 2005
         (649 letters)



>mm_chr2_143609915_143610963
          Length = 1049

 Score = 1216 bits (629), Expect = 0.0
 Identities = 644/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccatgtgcctcttacaccactaaacccaactctgtgcctatcttccacaggatcta 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttaccatgtgcctcttacactactaaacccaactctgtgcctatcttccacaggatcta 664

                                                                       
Query: 61  aacatagaggtctatagggatgtagacccacttccacttgaccctgccactccatccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aacatagaggtctatagggatgtagacccacttccacttgaccctgccactccatccact 604

                                                                       
Query: 121 ctatatcactaccacttcaccctctatatcctacctcatgggtggaccagggccttgtgg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctatatcaataccacttcaccctctatatcctacctcatgggtggaccagggccttgtgg 544

                                                                       
Query: 181 tgacaggaaagtctttaccttgttcacgccatcagccatggcctggagtgtgagctctcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgacaggaaagtctttaccttgttcacgccatcagccatggcctggagtgtgagctctcg 484

                                                                       
Query: 241 gggcccatcaaccgtcttcccattgtctgtggggccccagcttgcactgtagatgtcgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gggcccatcaaccgtcttcccattgtctgtggggccccagcttgcactgtagatgtcgat 424

                                                                       
Query: 301 cagttgaggcatgtggctgatggaggaggcttcgatgatgtctgtcataaagggctggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagttgaggcatgtggctgatggaggaggcttcgatgatgtctgtcataaagggctggtc 364

                                                                       
Query: 361 cagcatccggatccctgtgtgcaggtgggacaagaaacaagactttggcaccctagctct 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cagcatccggatccctgtgcgcaggtgggacaagaaacaagactttggcaccctagctct 304

                                                                       
Query: 421 cagaagacatgggggtagagaaaagtttgggttctgggaggagctggggaccttcagtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagaagacatgggggtagagaaaagtttgggttctgggaggagctggggaccttcagtgc 244

                                                                       
Query: 481 cttcagaacaccatggagtctgagggtcaaaaatggttttcagagccgggtggtggtggc 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttcagaacaccatggagtctgagggtcaaaaatggttttcagagccgggtggtggtggc 184

                                                                       
Query: 541 gcatgcctttaattccagcacttgggaggcaggggcaggtggatttctgagttcgaggcc 600
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 183 gcatgcctttaattccagcacttgggaggcagaggcaggtggatttctgagttcgaggcc 124

                                                            
Query: 601 agcctggtctacaaagtgagttccagaacagccagggctacacagagaa 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agcctggtctacaaagtgagttccagaacagccagggctacacagagaa 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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