Query= MSMg01no508_d07.b1 MSMg01no508_d07.b1 CHROMAT_FILE:
MSMg01no508_d07.b1 PHD_FILE: MSMg01no508_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:02 2005
(693 letters)
>mm_chr2_87811949_87813042
Length = 1094
Score = 1178 bits (609), Expect = 0.0
Identities = 671/695 (96%), Gaps = 14/695 (2%)
Strand = Plus / Plus
Query: 5 gaattcactattga---ttacaggctagccacaaacatattctgattatccaaacatttt 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcactattgagag--a-aggctagccacaaacatattctgattatccaaacatttt 258
Query: 62 catagcaaataagtacatgaaacaattatatttagtaagaacataaaacaataacatatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catagcaaataagtacatgaaacaattatatttagtaagaacataaaacaataacatatt 318
Query: 122 gataagaaaatgacattgtgaaactcatatctttgaatattcatttaattatcaggaatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gataagaaaatgacattgtgaaactcatatctttgaatattcatttaattatcaggaatt 378
Query: 182 gtaagggaagaagacacattgttagatttttattta---attttttaaataaaatgtgac 238
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 379 gtaagggaagaagacacattgttagatttttatttatttattttttttataaaatgtgac 438
Query: 239 catctctaccccaagcaagcatggtaaaataaatttaaactgttttgtttcactttttaa 298
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 catctctaccccaagcaagcatgataaaataaatttaaactgttttgtttcactttttaa 498
Query: 299 aaaaggaaagtaaacatgtttttattcatcagaaggcactagtagcagacaaaaaataat 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaaggaaagtaaacatgtatttattcatcagaaggcactagtagcagacaaaaaataat 558
Query: 359 aactgcattcaagtcaagcttactgagtttattgacattatttag-gtgaccatgtctga 417
||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct: 559 aactgcattcaagtcaagcttactgcgtttattgacattatttagag-gaccatgtctga 617
Query: 418 ggaataaactcgaagccagccatgtcactgaaaa-ctttgttcatgaaggcacatttcca 476
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct: 618 ggaataaactcgaagccagccatgtcactgaaaacctttgttcatgaaggcgcatctcca 677
Query: 477 gatacatgggattcagcct-ggagatctccactgtttctaacacagacctcaccttggct 535
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gatacatgggattcag-ctaggagatctccactgtttctaacacagacctcaccttggct 736
Query: 536 gtgaacttgaaatttctatggctatacacacagaagaggaataaaacagaaccattggaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtgaacttgaaatttctatggctatacacacagaagaggaataaaacagaaccattggaa 796
Query: 596 gatagaattcgtgatacctgcatggattgaagtggccatgaactggtcagtcaggaagtc 655
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 797 gatagaattcgtgatacctgcatggattgaggtggccatgaactggccagtcaggaagtc 856
Query: 656 ctttctcccaaccaatcattggtgcttgtacaacc 690
||||||||||||||||||||| |||||||||||||
Sbjct: 857 ctttctcccaaccaatcattgctgcttgtacaacc 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space: 740372
Effective search space used: 740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_d07.g1 MSMg01no508_d07.g1 CHROMAT_FILE:
MSMg01no508_d07.g1 PHD_FILE: MSMg01no508_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:02 2005
(666 letters)
>mm_chr2_87989895_87990960
Length = 1066
Score = 899 bits (465), Expect = 0.0
Identities = 530/577 (91%), Gaps = 40/577 (6%)
Strand = Plus / Minus
Query: 129 aatgctcttaagttggctacatgaccaaagcatttataattgtttcaaattaaatattaa 188
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1066 aatgctcttaagttggctacatgaccaaagcatttatagttgtttcaaattaaatattaa 1007
Query: 189 ttttgtattaaaatcagatttttattttttaatactaaagtatttcttttttattcattt 248
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttttgtattaaaatgagatttttattttttaatactaaagtatttcttttttattcattt 947
Query: 249 tatatgctaaagtatttctttttgtttataattttttttaatgctaacgtatttctc--- 305
|| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 946 ta-atgctaaagtatttctttttgtttataattttttctaatgctaaagtatttctcttt 888
Query: 306 ------------------------------------tttgtttctaattttgtttctcat 329
||||||||||||||||||||||||
Sbjct: 887 gtttctaattttatttctaatgctaaagtatttctttttgtttctaattttgtttctcat 828
Query: 330 tgctatagcttgctatattctcttttaatatatacacataatggtaaaggtaagaaacat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tgctatagcttgctatattctcttttaatatatacacataatggtaaaggtaagaaacat 768
Query: 390 gaagacttttctggtatatttccacttagtgtcggacatttgacatttgtaaccatagtt 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 767 gaagacttttctggtatatttccacttagtgtcggacatttgacatttgtaaccttagtt 708
Query: 450 ggatattgagtttgtgcgggcattctctcacttggactaatgtccactgcaaacttctca 509
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 707 ggatattgagtttgtgcgggcattctctcacttggactaatgtccattgcaaacttctca 648
Query: 510 gtgcttacataagtttgtaatatgtttcagatgattattatattttatcatgaagtatgc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gtgcttacataagtttgtaatatgtttcagatgattattatattttatcatgaagtatgc 588
Query: 570 tagcatcaaatatatggatatatgatttacacatgcatataaacataattcacatataat 629
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 587 tagcatcaaatatatggatatatgatttacacgtgcatataaacataattcacatataat 528
Query: 630 gataatctacattttaattacagatgagaaaagtaca 666
|||||||||||||||||||||||||||||||||||||
Sbjct: 527 gataatctacattttaattacagatgagaaaagtaca 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
