BAC Information

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BAC

Clone NameMSMg01-508N06
Chromosome2 (Build37)
Map Location 87,223,175 - 87,223,635
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121
Downstream geneOlfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508N06.T7 (MSMg01no508_n06.b1)MSMg01-508N06.TJ (MSMg01no508_n06.g1)
ACCAG582649AG582650
length747744
length of high quality
(start - end)		621 (52 - 672)576 (85 - 660)
definitionCHROMAT_FILE: MSMg01no508_n06.b1 PHD_FILE: MSMg01no508_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:52 2005CHROMAT_FILE: MSMg01no508_n06.g1 PHD_FILE: MSMg01no508_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACTTAGGAATCTCAAATGACTTAGAAACACATAAAG
AAATGTTCAACATTCCTAGTCATCAGGTAAATGCAAATAAAAATGGCGCT
GAGATTCTACCTTACACCAGTCAGAATGGTTAAGATCAAAAACTCAGGTG
ACAGCAGATGCTGGAGAAAATATGGAGAAAGAAGAACACTCCTCCATTGC
TGGTGGGACTGCAATCTGCTACAACCACTCTGGAAATCAGTCTGTCAGTT
CTTCAGAAACTTGGACATACCATTAACTGAGAACACAGCTATACTACTCC
TGGACATATACCCAAAAGATACTCCAATGTATAACAAGGACACATGCTCC
ACTATGTTTATTTTATATTGCCTTTTCTAGTTCTTTTTTAGTTGATATGG
TTAACCCAGTCTCTAATATTATATATTGTACAATTTTGATAAAGACTATG
TGTCCTAATGTATAATATTACTAAAGTTTTATTGTAATCAGTCTGGTGAC
AGAAGCAAATATATATTCATCTATCTTTCTCTTCCTCTACCTATCTGGTT
CTATTTTCCAATATAAAACCAAAGACAGTTGAATTTAAAAATGTATACAA
GTATTCAGCTTGCAAATTAACCATATTTTTGCCTGTACTTACTGTGCAAA
AGTGAAAAATGGCTTACTTGAGGATGAATGACCCCAAAAGAGCTTTG

NNNCCCGATGCAGTGGGAGGCCTGGNGGNCGCCTGGTCAAAAAAGGGAGG
NGAACTANAGAAGTTTCAAAAAAAGGGGTTGNNNAGCTCTGTACCCCATT
TTTAATGGGGTTATTTGAATTTCTGGAGTTCAGCTTCTCAAGCTTTTTAA
AAAAATATATATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAA
ATTCTTTCCAAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTATTTAT
GCCATACAGAAGCTTCGCAATTTTATGAGGTCCCATTTGTTGATTCTTGA
TCTTTCAACACAGGCCATTGCTGNTTTTTTTAGGAATTTATACCCTGTGC
CCATATCTTTGAGGGTTTTCCCCACTTTCTCCTCTATAAATTTCAGTGTC
TCTGGTTTTATGTGGAGCCCCCTGATCCACTTAGACTTGAGCTTTGTACA
AAGAGATAAGCCCCCAATGGAGGAGCTAGAGAAAGTACTCAAAGGAGCTA
AAGGGGTCTGCAACCCTATATGTGGAACACCAATATGAACTAACCAGTAC
CCCCAGAGCTCATGTCTCTAGCTGTATATGTAGTAGAAGATGGCCTAATC
AGCTATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCT
CAATACAGAGGAACTCCTAGGCCAAGAAGTGGGAGTGGTGGGGTAGGGGG
AGTGGTTTNNTTTTNTTCTTGGTATCTCCTTTTAATATTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_n06.b1 MSMg01no508_n06.b1 CHROMAT_FILE:
MSMg01no508_n06.b1 PHD_FILE: MSMg01no508_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:52 2005
         (621 letters)



>mm_chr2_87222615_87223635
          Length = 1021

 Score =  861 bits (445), Expect = 0.0
 Identities = 457/461 (99%)
 Strand = Plus / Minus

                                                                        
Query: 161  tggagaaaatatggagaaagaagaacactcctccattgctggtgggactgcaatctgcta 220
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tggagaaaatatggagaaagaggaacactcctccattgctggtgggactgcaatctgcta 962

                                                                        
Query: 221  caaccactctggaaatcagtctgtcagttcttcagaaacttggacataccattaactgag 280
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 961  caaccactctggaaatcagtctgtcagttcttcagaaacttggacatactattaactgag 902

                                                                        
Query: 281  aacacagctatactactcctggacatatacccaaaagatactccaatgtataacaaggac 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  aacacagctatactactcctggacatatacccaaaagatactccaatgtataacaaggac 842

                                                                        
Query: 341  acatgctccactatgtttattttatattgccttttctagttcttttttagttgatatggt 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  acatgctccactatgtttattttatattgccttttctagttcttttttagttgatatggt 782

                                                                        
Query: 401  taacccagtctctaatattatatattgtacaattttgataaagactatgtgtcctaatgt 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  taacccagtctctaatattatatattgtacaattttgataaagactatgtgtcctaatgt 722

                                                                        
Query: 461  ataatattactaaagttttattgtaatcagtctggtgacagaagcaaatatatattcatc 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ataatattactaaagttttattgtaatcagtctggtgacagaagcaaatatatattcatc 662

                                                                        
Query: 521  tatctttctcttcctctacctatctggttctattttccaatataaaaccaaagacagttg 580
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 661  tatctttctcttcctctacctatctggttctattttccaataaaaaaccaaagacagttg 602

                                                     
Query: 581  aatttaaaaatgtatacaagtattcagcttgcaaattaacc 621
            ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 601  aatttaaaaatgtataccagtattcagcttgcaaattaacc 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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