NNNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCTGAAGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACATCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTTCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCA
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACGGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGA
AACTCAAGAAAAACGAAGACTGAAGTGTGGA

NNNNNTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGTAATAGAGGAA
GAACAAATAACAGAATTGATGTACAATGACCAAGGAGGAAATAGAAGGTT
TGTGGCCATTTGGGTTTAATTACAAGTCTTTCTTTAGCTGCTCGCTGTGG
TTAGGAGAAGCAGACAAAAGAGCTGCCTCTGAGGGCAAGATCAGATGATG
AGCAGAGCCAGAAAGAGAGCTGAAGCAGGTTAGCAAGTCTGATGGGCATG
ACCAGGCAAAATGAACTGTCAAGGGCTATAACTTCCAGAAGTGGTGGGGG
TAGGCTAAAAGAGCAGAACTGAATGTCCCAGGGGGTAGATAAACCAAAGA
AAATGGAAGGCCACCTCCAAAGGAAGCTGACAATATTGCCAGTTACATGA
TCCAAAGGAATCTAGGAACCTCGAGTCCCATCCAAGGCATGGTCTACAGC
CCCAGATCTGTGTAAAAGTGGAGAATGTTTGTCTCCCTTGTAACATTTGG
CAGTGTGTGGAGACAGGATTGTCATGTATGGTTTGGGAGAAATTATTTGT
AATGGGTAAGTAAAGGAGAGGAAAAGGTCAGCCCCACCCACACCCCAACA
AGGCATGACCTACCCCTAAGGCGAATCTTCTGAGTCCTGGGGGTCTCTGA
GCAGGGCTGTGCCTGGCAAAGCCATGCAGCAACTACCTAGAAGN

Query= MSMg01no509_f04.g1 MSMg01no509_f04.g1 CHROMAT_FILE:
MSMg01no509_f04.g1 PHD_FILE: MSMg01no509_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:31 2005
         (548 letters)



>mm_chr2_116861135_116862082
          Length = 948

 Score =  965 bits (499), Expect = 0.0
 Identities = 538/553 (97%), Gaps = 6/553 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaggtaatagaggaagaacaaataacagaattgatgtacaatgaccaaggaggaaata 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaggtaatagaagaagaacaaataacagaattgatgtacaatgaccaaggaggaaata 260

                                                                       
Query: 61  gaaggtttgtggccatttgggtttaattacaagtctttctttagctgctcgctgtggtta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gaaggtttgtggccatttgggtttaattacaagtctttctttagctgctcactgtggtta 320

                                                                       
Query: 121 ggagaagcagacaaaagagctgcctctgagggcaagatcagatgatgagcagagccagaa 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ggagaagcagacaaaagagctgcctctgagggcaagagcagatgatgagcagagccagaa 380

                                                                       
Query: 181 agagagctgaagcaggttagcaagtctgatgggcatgaccaggcaaaatgaactgtcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagctgaagcaggttagcaagtctgatgggcatgaccaggcaaaatgaactgtcaag 440

                                                                       
Query: 241 ggctataacttccagaagtggtgggggt-aggctaaaagagcagaactgaatgtcccagg 299
           |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 441 ggctgtaacttccagaagtggtgggggtcag-ctaaaagagcagaactgaatgtcccagg 499

                                                                       
Query: 300 gggtagataaaccaaagaaaatggaaggccacctccaaaggaagctgacaatattgccag 359
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggtagataaaccaaagaaaaaggaaggccacctccaaaggaagctgacaatattgccag 559

                                                                       
Query: 360 ttacatgatccaaaggaatctaggaacctcgagtcccatccaaggcatggtctacagccc 419
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 ttacatgatccaaaggaatctaggaacctcgagtcccatccaaagcatggtctacagccc 619

                                                                       
Query: 420 cagatctgtgtaaaagtggagaatgtttgtctcccttgtaacatttggcagtgtgtggag 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 cagatctgtgtaaaagtggagaatgtttgtctcccttgtaacatttggcagtgtctggag 679

                                                                       
Query: 480 acaggattgtcatgtatggtttgggagaaattatttgtaatgggtaagtaaagga----g 535
           |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    |
Sbjct: 680 acaggattgtcatgtatggtttgggagaaattattcataatgggtaagtaaaggatagag 739

                        
Query: 536 aggaaaaggtcag 548
           |||||||||||||
Sbjct: 740 aggaaaaggtcag 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)