BAC Information

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BAC

Clone NameMSMg01-509M24
Chromosome2 (Build37)
Map Location 33,285,617 - 33,441,252
singlet/doubletdoublet
Overlap geneZbtb34, Zbtb43, LOC676764, Lmx1b
Upstream geneSlc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2
Downstream geneLOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M24.T7 (MSMg01no509_m24.b1)MSMg01-509M24.TJ (MSMg01no509_m24.g1)
ACCAG583400AG583401
length800812
length of high quality
(start - end)
244 (79 - 322)493 (75 - 567)
definitionCHROMAT_FILE: MSMg01no509_m24.b1 PHD_FILE: MSMg01no509_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:10 2005CHROMAT_FILE: MSMg01no509_m24.g1 PHD_FILE: MSMg01no509_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,285,617 - 33,285,858)(33,440,760 - 33,441,252)
sequence
CAATAATTTGCGGGCGCTAAACGACNCACTATTTTCAGAACATGCGCNGG
AATCCACGGGATTTCCCCCAAGAGGCAAGACATCACCTAGTCACAGGCAA
TGTCTGAACACCCACTGTAAAGCCTTGGAGACTCACTGTACCTTCAACTC
CTTTCGTCCACCACTCAACTGCATTTTGACTTTTACTAAGCAAGCACTCT
ACTATTTTTTTTAAACTTCCTACACTAAGTTTGGCGTTAGCATAAAGGAA
GGATGGGGGAGGGTGAAACCTCTGGAGTCAGAGACCAACTAAGAAGCTGT
TGCAATAATCCAGATGTGAATTTTTTTAGCCTAGACTAGGGAACAAAGAG
AGAATGGGCAAATACGGACAGCAAAATGTTTGCATGCAAAACGCTCCACG
GGAAAACTACGGACGCCACCAAGGAACGATGAAGGATCAGTAAAGCTATT
TCCAAGAAAACCCTTCTGGGAATCATTTTAAACCTCCCCGAGGCAAAGTG
CACGAAGTGGTTAAAAAGTCTACATCTGGAGTGGAGGGGGAGACATCGGT
AGAACTGCCCAGCGTGGTGAACCAGGCATAGACCTTTGCATGTCAGATAT
TCCCAGCATTGAGAGGTCTGTAAGGAGTTCATCTAAACTCTCAGTTCTTA
CCTGGAGAAACTGAAGCCCTCCTTGAGATGGGAAAAAACTGCTGAAAACC
TCAAGAGGGGGCGCCCACAAATGAATAACCCCCTAACATTCCCCGGGCTT
AGGCAACATAAATTTTAAATAGTCCCTTCCCTAATCCGCCCCTATCCTAT

NCATTGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCCCACATCAGCAAACTAGTTCTG
CCTGACCATGGCCACAGAGCCACGGACTGGGGGAGGGGCCACTCGGAAGT
TGGCCATAAATTTCTTGAGATGCTTTAATTTTTTAAAAGCCCCATGTAGA
TGCTTTGCATTGCGAAAACCCACAAATATCGAGTAAATGAGGTGTGCCGG
CAGAAGGCCTGGCTGGGCCTGCAGCTCTTCCTTGCCCGCCCAGCAGCTGG
GCCCAAGCTCAGCTGGGGCCCCTGTTCTGGCCAGCCCAGGGCCGAGGGGC
CCATCTTTGTTCTGAGTAGGGCTCAGACTGCTGAGTGCCTGGGTAAATAG
TCGCCACAGTAATCGCAGCCTGATTCCAACTAATTAAATCCTGCGCCAAG
AACCCACTCCAGCAGAATCCCGTGAGGCCACGAAAACACAGACACCCCAG
ACGGGCTTTGCTCAGGGTCGGGCCCGCTGCTCTAATCCTGTATCTTTTGA
AAGATAGGCGCGTCCTGGGATGAGGGGTCAGCAGCCTGCCCTGAGCAGAG
CGGTGGAATTTTTCAATAACCAGCAGCTGGGTCACCAGGCACACAAAGGC
TGTGTAATATCCTGTGAGCTTACTCCGGTAGAAGAGACAGCTCCCTTCAG
GCCTGGGGGAGCCGCCCCTCGCCGCCCAGGTCCCCAGCGGCCAGTGACAA
GCTACCGGGCCAGGCCTCCCTCCCCTGCTGCCAAAAGGCAGGAGTACTGA
AGTTCGGCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m24.b1 MSMg01no509_m24.b1 CHROMAT_FILE:
MSMg01no509_m24.b1 PHD_FILE: MSMg01no509_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:10 2005
         (244 letters)



>mm_chr2_33285417_33286060
          Length = 644

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacatcacctagtcacaggcaatgtctgaacacccactgtaaagccttggagactcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacatcacctagtcacaggcaatgtctgaacacccactgtaaagccttggagactcactg 260

                                                                       
Query: 61  taccttcaactcctttcgtccaccactcaactgcattttgacttttactaagcaagcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccttcaactcctttcgtccaccactcaactgcattttgacttttactaagcaagcact 320

                                                                       
Query: 121 ctactattttttttaaacttcctacactaagtttggcgttagcataaaggaaggatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactattttttttaaacttcctacactaagtttggcgttagcataaaggaaggatgggg 380

                                                                       
Query: 181 gagggtgaaacctctggagtcagagaccaactaagaagctgttgcaataatccagatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggtgaaacctctggagtcagagaccaactaagaagctgttgcaataatccagatgtg 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no509_m24.g1 MSMg01no509_m24.g1 CHROMAT_FILE:
MSMg01no509_m24.g1 PHD_FILE: MSMg01no509_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:11 2005
         (493 letters)



>mm_chr2_33440560_33441452
          Length = 893

 Score =  915 bits (473), Expect = 0.0
 Identities = 488/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcccacatcagcaaactagttctgcctgaccatggccacagagccacggactggggga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 693 agtcccacatcagcaaactagttctgcctgaccatggccacagagccatgggctggggga 634

                                                                       
Query: 61  ggggccactcggaagttggccataaatttcttgagatgctttaattttttaaaagcccca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggggctactcggaagttggccataaatttcttgagatgctttaattttttaaaagcccca 574

                                                                       
Query: 121 tgtagatgctttgcattgcgaaaacccacaaatatcgagtaaatgaggtgtgccggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgtagatgctttgcattgcgaaaacccacaaatatcgagtaaatgaggtgtgccggcaga 514

                                                                       
Query: 181 aggcctggctgggcctgcagctcttccttgcccgcccagcagctgggcccaagctcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aggcctggctgggcctgcagctcttccttgcccgcccagcagctgggcccaagctcagct 454

                                                                       
Query: 241 ggggcccctgttctggccagcccagggccgaggggcccatctttgttctgagtagggctc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggggcccctggcctggccagcccagggccgaggggcccatctttgttctgagtagggctc 394

                                                                       
Query: 301 agactgctgagtgcctgggtaaatagtcgccacagtaatcgcagcctgattccaactaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agactgctgagtgcctgggtaaatagtcgccacagtaatcgcagcctgattccaactaat 334

                                                                       
Query: 361 taaatcctgcgccaagaacccactccagcagaatcccgtgaggccacgaaaacacagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taaatcctgcgccaagaacccactccagcagaatcccgtgaggccacgaaaacacagaca 274

                                                                       
Query: 421 ccccagacgggctttgctcagggtcgggcccgctgctctaatcctgtatcttttgaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccccagacgggctttgctcagggtcgggcccgctgctctaatcctgtatcttttgaaaga 214

                        
Query: 481 taggcgcgtcctg 493
           |||||||||||||
Sbjct: 213 taggcgcgtcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)