BAC Information

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BAC

Clone NameMSMg01-511A19
Chromosome2 (Build37)
Map Location 111,967,723 - 111,968,272
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1
Downstream geneOlfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511A19.T7 (MSMg01no511_a19.b1)MSMg01-511A19.TJ (MSMg01no511_a19.g1)
ACCAG584338AG584339
length753762
length of high quality
(start - end)		595 (47 - 641)551 (73 - 623)
definitionCHROMAT_FILE: MSMg01no511_a19.b1 PHD_FILE: MSMg01no511_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:48 2005CHROMAT_FILE: MSMg01no511_a19.g1 PHD_FILE: MSMg01no511_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTGCACTATTCCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACT
ATTAATGACTGATTCTATTTCTTTAGGGGTTATGGGACTGTTTAGATCAT
TAACCTGGTATTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAACTTG
TCCATTTTATCCAGGTTCTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAA
GGATCTGATGGTGTTTTGAATTTATTCAGGATCTATTGTTATGTCTCCCA
TTTCATTTCTGATTTTGTTAATTAGGATGCTTTCCCTGTGCCCTCTATTG
AGTTTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGCT
CCTTCTTTGGTTGATTCTTTGAATAGTTCTTCTTGATTCTACTTGGCTGA
TTTCGCCCCTGAGTTTGATTATTTCCTGCATTCTACTCCTCTTGGGTGAA
TTTGCTTCCTTTTGTTCTACAGCTTTTAGGTGTGTTGTCAAGCTGCTAGT
GTGTGGTCTCTCTAGTTTCTTTTTGGAGGCACTCAGAGCTATGAGTTTTC
CTCTTAGAAATGCTTTCATTGTGTACCATAAATTTGGGTATGTGTTGGCT
TCATTTTCATTAAACTCTAAAAAGTCTTTAATTTTTCTCTATTCCTTCCT
TGACCAAGGTATTATTGAGAAGAGTGTTGTTCAGTTTTCATGTGAATGTT
GGC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCCTTTTGATATCTTTATCAGTTCTT
ATGGATATTATTTCATGTAGATGAATACTTGTGTATAGCCGACTTTTATA
TGTCTTCTTGCCAGATTTCAACAAATTACTTGCACAATCTGAAAACTATG
GAAAGAAAGTGCAGCCATCTATATGTAAAAAGATAAATACATATAATGTG
AAGCATAAGTAAGGTATAGAAGAGTCTATACCATAGGATGCTTTTCAATA
TAGAAAGATAGGGGACATGGATTACAGGCTATGATCAAAACATATTTGCC
TATATGAATCATGTTTTAATTAAAAAAATGAGAATAGATTCAAATACTCT
GTGTAATTAGAAATTATTTTATAAACCAATAATAGTACCCAATGATCTTT
GCTTCTATTAGGTATTCTGTGACTTCAAATATTTAGTTTCATTTGCTCAT
GCTAACATTAGGTTTTAGCACTCATATTTAGGCATAGCTTTTGCCCTATC
TAAAATTAAGCAGGTAATAAGTACATAGACAAGCATCACCAACAAAATAC
AAGAAATGGGAGAGAAAAACTCAGATATAGAAGATATAATTGAAGAAATC
AATACATCGGTCGAAGTCTAAAATGTTACTGACATAAAACATCTAAAAAA
AATCTAGGACACTATTGAAAGACCTAACCCGAGCATTAATAGATATAGAA
GAAGAAGACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_a19.g1 MSMg01no511_a19.g1 CHROMAT_FILE:
MSMg01no511_a19.g1 PHD_FILE: MSMg01no511_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:48 2005
         (551 letters)



>mm_chr2_111967573_111968522
          Length = 950

 Score = 1027 bits (531), Expect = 0.0
 Identities = 546/551 (99%), Gaps = 1/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccttttgatatctttatcagttcttatggatattatttcatgtagatgaatacttgt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 attccttttgatagctttatcagttcttatggatattatttcatgtagatgaatacttgt 641

                                                                       
Query: 61  gtatagccgacttttatatgtcttcttgccagatttcaacaaattacttgcacaatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtatagccgacttttatatgtcttcttgccagatttcaacaaattacttgcacaatctga 581

                                                                       
Query: 121 aaactatggaaagaaagtgcagccatctatatgtaaaaagataaatacatataatgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aaactatggaaagaaagtgcagccatctatatgtaaaaagataaatacatataatgtgaa 521

                                                                       
Query: 181 gcataagtaaggtatagaagagtctataccataggatgcttttcaatatagaaagatagg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 520 gcataagtaaggtatagaagagtctataccataggatgtttttcaatatagaaagatagg 461

                                                                       
Query: 241 ggacatggattacaggctatgatcaaaacatatttgcctatatgaatcatgttttaatta 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 460 ggacatggattacaggctatgataaaaacatatttgcctatatgaatcatgttttaatt- 402

                                                                       
Query: 301 aaaaaatgagaatagattcaaatactctgtgtaattagaaattattttataaaccaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 401 aaaaaatgagaatagattcaaatactctgtgtaattagaaattattttaaaaaccaataa 342

                                                                       
Query: 361 tagtacccaatgatctttgcttctattaggtattctgtgacttcaaatatttagtttcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tagtacccaatgatctttgcttctattaggtattctgtgacttcaaatatttagtttcat 282

                                                                       
Query: 421 ttgctcatgctaacattaggttttagcactcatatttaggcatagcttttgccctatcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgctcatgctaacattaggttttagcactcatatttaggcatagcttttgccctatcta 222

                                                                       
Query: 481 aaattaagcaggtaataagtacatagacaagcatcaccaacaaaatacaagaaatgggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaattaagcaggtaataagtacatagacaagcatcaccaacaaaatacaagaaatgggag 162

                      
Query: 541 agaaaaactca 551
           |||||||||||
Sbjct: 161 agaaaaactca 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space:   508540
Effective search space used:   508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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