BAC Information

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BAC

Clone NameMSMg01-511B16
Chromosome2 (Build37)
Map Location 85,394,715 - 85,395,319
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik
Downstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511B16.T7 (MSMg01no511_b16.b1)MSMg01-511B16.TJ (MSMg01no511_b16.g1)
ACCAG584380AG584381
length730745
length of high quality
(start - end)		609 (45 - 653)527 (74 - 600)
definitionCHROMAT_FILE: MSMg01no511_b16.b1 PHD_FILE: MSMg01no511_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:52 2005CHROMAT_FILE: MSMg01no511_b16.g1 PHD_FILE: MSMg01no511_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTGTGTATTTGTGCCATATTTTCATTACCCAGTAAACTGCTGAC
ACACACATAGGAGAGCAGCACAAATAAATATGCAGGTTTTTTTGGGTACA
ATAAAGATTCCTTTGGCTGTATAATCCAGTTTCTCTTCAAATTGTAGAAA
TATTTTGCCTTTTACTAGAGGCTTATTAAATGTTAAGTGGCAGTTTTTAT
TAAAACAACAATTTAACCTCTATTTAATTTTTAATGATCAGATTCTTTGG
ATAAAGGGAACTTAGCTAACAAATTTTCATTTGAGGGTGCAAGGCACACT
CTCTGTGTTTCCCAGTTAGTCAGAGGGTGAGTTCATGTTGCTGGGTGACT
CTTTCATTTCCTTGACTTTCTGTGCTGTTCTGGGAGGACAAGGACGTGCA
GTCTCTAACTTGTACCCAGCCTGGCTGTGGGGTGGGGACTGCCATTTATT
CTTCTCTACTTGCAGGAGCCTTCCTTGCATGTCATTCCCCAATTCTGCAT
CTTGTGCATGCAATTTGTTTTTTGTGTTCCAAAGTCATGTTTATATTCAC
TTAATAGTTGACTCCTTCATATGGAATAATTTCAACATTGTTTAGTTAGT
GTAGAACATAGGTTGCTCAATCACCATCTCACATTACTTGCTTATGAGTG
CTAGTCGTTTGTGGTTGGAGAATGGCATGT

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCTGCTATGAACATAGTGGAGCAT
GTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGG
TATTGCGGGATCCTCCAGTAGTACTATGTCCAATTTTCTGAGGAACCACC
AGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGG
AGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA
ATTTTTGATCTTAGCCATTCTGACTGGTGTGAGATGGACTTTGACTTTTT
CTATTCCTATTTGTCTTCGATTTGATCTCATTAATTTGCCATGAACAATG
TGTATAGCCTTGTCTTGTCCCTGATTTTAATGAAAATGCTTTGAGTTTCC
TCTCCAATTGGGTTGATGCTATCTGTGGGCTTGCTGAAAATCAAATTATG
TTAAGGTATGTCCTTGTATACTCAGTCTGTAGTGGAATCTTATTCATGAA
TGGGATATTGGATTTTTTAAAGTCCTTTTTTCATAATGTAGCTTTTGTCT
TTGCCCCATTTACATGTGTTAATGTGGTTATGATATGTGTGCTTGACCAT
CGTTGTACCTCTAATGAAGCCTACTTGATCATAGTAGATAATCCTTTGAT
GGGGTCTTCCATTTGATTTGAAGGGTTTTGCTGAGACATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_b16.b1 MSMg01no511_b16.b1 CHROMAT_FILE:
MSMg01no511_b16.b1 PHD_FILE: MSMg01no511_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:52 2005
         (609 letters)



>mm_chr2_85394511_85395519
          Length = 1009

 Score = 1131 bits (585), Expect = 0.0
 Identities = 600/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattgtgtatttgtgccatattttcattacccagtaaactgctgacacacacat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattgtgcatttgtgccatattttcattacccagtaaactgctgacacacacat 264

                                                                       
Query: 65  aggagagcagcacaaataaatatgcaggtttttttgggtacaataaagattcctttggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagagcagcacaaataaatatgcaggtttttttgggtacaataaagattcctttggct 324

                                                                       
Query: 125 gtataatccagtttctcttcaaattgtagaaatattttgccttttactagaggcttatta 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtataatctagtttctcttcaaattgtagaaatattttgccttttactagaggcttatta 384

                                                                       
Query: 185 aatgttaagtggcagtttttattaaaacaacaatttaacctctatttaatttttaatgat 244
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 aatgttaagaggcagtttttattaaaacaacaatttgacctctatttaatttttaatgat 444

                                                                       
Query: 245 cagattctttggataaagggaacttagctaacaaattttcatttgagggtgcaaggcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagattctttggataaagggaacttagctaacaaattttcatttgagggtgcaaggcaca 504

                                                                       
Query: 305 ctctctgtgtttcccagttagtcagagggtgagttcatgttgctgggtgactctttcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctctgtgtttcccagttagtcagagggtgagttcatgttgctgggtgactctttcatt 564

                                                                       
Query: 365 tccttgactttctgtgctgttctgggaggacaaggacgtgcagtctctaacttgtaccca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccttgactttctgtgctgttctgggaggacaaggacgtgcagtctctaacttgtaccca 624

                                                                       
Query: 425 gcctggctgtggggtggggactgccatttattcttctctacttgcaggagccttccttgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctggctgtggggtggggactgccatttattcttctctacttgcaggagccttccttgc 684

                                                                       
Query: 485 atgtcattccccaattctgcatcttgtgcatgcaatttgttttttgtgttccaaagtcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtcattccccaattctgcatcttgtgcatgcaatttgttttttgtgttccaaagtcat 744

                                                                       
Query: 545 gtttatattcacttaatagttgactccttcatatggaataatttcaacattgtttagtta 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 gtttatattcacttaatagttgactccttcatatggaataatttcaacattgtttagtaa 804

                
Query: 605 gtgta 609
           |||||
Sbjct: 805 gtgta 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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