Query= MSMg01no511_d08.b1 MSMg01no511_d08.b1 CHROMAT_FILE:
MSMg01no511_d08.b1 PHD_FILE: MSMg01no511_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:00 2005
(548 letters)
>mm_chr2_88873422_88874369
Length = 948
Score = 1023 bits (529), Expect = 0.0
Identities = 547/561 (97%), Gaps = 13/561 (2%)
Strand = Plus / Minus
Query: 1 gaaaattaaatccacgtggagatacaaaagatggtcataaaaagacactttctagtgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaaattaaatccacgtggagatacaaaagatggtcataaaaagacactttctagtgaaa 542
Query: 61 agaacaaagtgcttcagaaaatattttcttagaatataaatgagataaaagaaatgcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaacaaagtgcttcagaaaatattttcttagaatataaatgagataaaagaaatgcttg 482
Query: 121 atcaaaacctttggtagttgtctcccaaggtgctcttgaaccatacgcaggctcatatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcaaaacctttggtagttgtctcccaaggtgctcttgaaccatacgcaggctcatatat 422
Query: 181 tctcttattctgtaacactacttgcatatctatttcttggttaaagtactaatattttta 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 tctcttattctgtaacactacttgcatatctatttcttgattaaagtactaatattttta 362
Query: 241 ttttctttgcccttgtctactatcaacaaacataaaaattgtttttatgaaagatgatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttctttgcccttgtctactatcaacaaacataaaaattgtttttatgaaagatgatag 302
Query: 301 cacaaatagcttcattaaataaacaaaataaaattttcaaggaaggagatagttaatatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacaaatagcttcattaaataaacaaaataaaattttcaaggaaggagatagttaatatg 242
Query: 361 atgaaatgcttcctgaaaagactgagaatctgaattcag-------------atgcaaaa 407
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 atgaaatgcttcctgaaaagactgagaatctgaattcagatacctagctcccatgcaaaa 182
Query: 408 agccaggaatagtatggcatgcatgtaatctttttatttggaagaagaaggcatcagtag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agccaggaatagtatggcatgcatgtaatctttttatttggaagaagaaggcatcagtag 122
Query: 468 tcacaaaaatgaacatagttgaagagttgaggttcaagttcaggacaatccattactaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcacaaaaatgaacatagttgaagagttgaggttcaagttcaggacaatccattactaca 62
Query: 528 aaaacatggtgaggaaaaata 548
|||||||||||||||||||||
Sbjct: 61 aaaacatggtgaggaaaaata 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_d08.g1 MSMg01no511_d08.g1 CHROMAT_FILE:
MSMg01no511_d08.g1 PHD_FILE: MSMg01no511_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:00 2005
(457 letters)
>mm_chr2_88750325_88751183
Length = 859
Score = 830 bits (429), Expect = 0.0
Identities = 452/461 (98%), Gaps = 6/461 (1%)
Strand = Plus / Plus
Query: 1 agtcacattgttattcagccacattgtttctcattagtgatccaaaattgttaatgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcacattgttattcagccacattgtttctcattagtgatccaaaattgttaatgtgaa 260
Query: 61 acactttgtctggaaaaaaaaa--gacattgattttgatcttggtatatgatgctatgct 118
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactttgtctggaaaaaaaaaaagacattgattttgatcttggtatatgatgctatgct 320
Query: 119 aagcaaaagtactcattaatgatattctctctgtaattttttaataagtagttcaatact 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaaaa-tactcattaatgatattctctctgtaattttttaataagtagttcaatact 379
Query: 179 tgttcctgcattttat--atatatatatttgccctgttatgagtcccagaaatggttagg 236
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttcctgcattttattgaca-atatatttgccctgttatgagtcccagaaatggttagg 438
Query: 237 aaagttttaccatagaacctttcaaatacaaatctctgttattacaattatggttaatat 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 aaagttttaccatagaacctttcaaatacaaatccctgttattacaattatggttaatat 498
Query: 297 tacaactagaaggatatagagttacaatatgtgatctgtgatatttttatcattaacttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tacaactagaaggatatagagttacaatatgtgatctgtgatatttttatcattaacttt 558
Query: 357 aaaattttttcacattttaagcacatagtcaacttaacttttaatatatatttgattgcc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaattttttcacattttaagcacatagtcaacttaacttttaatatatatttgattgcc 618
Query: 417 ttggtgttttatgaaccccccaaaaaatgcctaatactaac 457
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 ttggtgttttatgaacccccccaaaaatgcctaatactaac 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 859
Length adjustment: 10
Effective length of query: 447
Effective length of database: 849
Effective search space: 379503
Effective search space used: 379503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
