Query= MSMg01no511_i02.b1 MSMg01no511_i02.b1 CHROMAT_FILE:
MSMg01no511_i02.b1 PHD_FILE: MSMg01no511_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:23 2005
(510 letters)
>mm_chr2_38639056_38639965
Length = 910
Score = 971 bits (502), Expect = 0.0
Identities = 505/506 (99%)
Strand = Plus / Plus
Query: 5 gaattctggagtttctcacataagcaggagtttattccatataaagttataacaatatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggagtttctcacataagcaggagtttattccatataaagttataacaatatct 264
Query: 65 aatcagtgttatttacaatcacacagaaaaaaacctcaaaaataaaaccaaatctactca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcagtgttatttacaatcacacagaaaaaaacctcaaaaataaaaccaaatctactca 324
Query: 125 cttagaaacacttaaaaagaaattagtaagggcttagtcttatactccaaaccataaagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttagaaacacttaaaaagaaattagtaagggcttagtcttatactccaaaccataaagc 384
Query: 185 tttaagtcccctaagaggatgaggctaccttatcaatggcctcacgaccccaatcctatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaagtcccctaagaggatgaggctaccttatcaatggcctcacgaccccaatcctatc 444
Query: 245 tataattatcagtactaaataaggttttgacagattgtaaactggattaaagaatttaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tataattatcagtactaaataaggttttgacagattgtaaactggattaaagaatttaaa 504
Query: 305 atataaacaaatttttaaagatagaatttactgtgtactgaaatatgaagcttaagattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atataaacaaatttttaaagatagaatttactgtgtactgaaatatgaagcttaagattt 564
Query: 365 tttcaaatcaatattaaactcaaatctatcacctctccctttcctgctctttctacaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcaaatcaatattaaactcaaatctatcacctctccctttcctgctctttctacaatt 624
Query: 425 aattaatccaccagttttccataggtttttttctgtatctcacaacatttgcaggcagtt 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 aattaatccaccagttttccatagttttttttctgtatctcacaacatttgcaggcagtt 684
Query: 485 cctataataaaacttgactgaattct 510
||||||||||||||||||||||||||
Sbjct: 685 cctataataaaacttgactgaattct 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_i02.g1 MSMg01no511_i02.g1 CHROMAT_FILE:
MSMg01no511_i02.g1 PHD_FILE: MSMg01no511_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:23 2005
(578 letters)
>mm_chr2_38806709_38807681
Length = 973
Score = 1048 bits (542), Expect = 0.0
Identities = 567/578 (98%), Gaps = 5/578 (0%)
Strand = Plus / Minus
Query: 1 ctgaagaatcctgggctcttaactgccccaacttcctgtccttggataagcccaagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctgaagaatcctgggctcttaactgccccaacttcctgtccttggataagcccaagcaac 714
Query: 61 tacttcttgccttgcccttggctgtgagtcatgtggagatgccagggactaagttggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tacttcttgccttgcccttggctgtgagtcatgtggagatgccagggactaagttggcag 654
Query: 121 ggatgaagtacagggtccatgggctcttcaggaagacgacaaatgaaagaacaggagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggatgaagtacagggtccatgggctcttcaggaagacgacaaatgaaagaacaggagagg 594
Query: 181 acagtccaggggtgaacgggttccccaagggccccatgtttgccaacctctactgtcaca 240
|||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 593 acagtcca-----gaacaggttcctcaagggccccatgtttgcccacctctactgtcaca 539
Query: 241 ggtgtggctcctcccactggactgtaagatctgacttaaatcacctgtcacttggtctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggtgtggctcctcccactggactgtaagatctgacttaaatcacctgtcacttggtctgt 479
Query: 301 agctgacctgcagcaggtcgttgaataaaaggaagtgcagaaaaggtgaggcttgaagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agctgacctgcagcaggtcgttgaataaaaggaagtgcagaaaaggtgaggcttgaagta 419
Query: 361 ctgaaagagaggcctctattctctccccattagcaaccctgcctgtgggcctcttcccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctgaaagagaggcctctattctctccccattagcaaccctgcctgtgggcctcttcccag 359
Query: 421 tgtatggttgagcaaaggattctagaaaactaaacagtgatgcggagatctgggactttg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 358 tgtatggttgagcaaaggattctagaaaactaaacagtgatgcggagatctgtgactttg 299
Query: 481 tggctgcttcaaaggcaggtggatctctggaggcagccatccgtcaaccaggcccggctc 540
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 298 tggctgcttcgaaggcaggtggatctctggaagcagccatccgtcaaccaggcccggctc 239
Query: 541 ccttccactcaccagcggcagccttgggtgcctcctgt 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccttccactcaccagcggcagccttgggtgcctcctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 973
Length adjustment: 10
Effective length of query: 568
Effective length of database: 963
Effective search space: 546984
Effective search space used: 546984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
