BAC Information

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BAC

Clone NameMSMg01-511L08
Chromosome2 (Build37)
Map Location 94,804,926 - 94,805,373
singlet/doubletsinglet
Overlap genenone
Upstream geneAlkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511L08.T7 (MSMg01no511_l08.b1)MSMg01-511L08.TJ (MSMg01no511_l08.g1)
ACCAG584840AG584841
length721740
length of high quality
(start - end)
124 (79 - 202)461 (76 - 536)
definitionCHROMAT_FILE: MSMg01no511_l08.b1 PHD_FILE: MSMg01no511_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:39 2005CHROMAT_FILE: MSMg01no511_l08.g1 PHD_FILE: MSMg01no511_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATTTGCGGCCGCTCCCACGACCCACTATTTTCCAGAGGATCCGCGG
AATTCTCACAGTTGTCAGCTCTTGTTGTGAAAACCTTAATTTAAAACTTC
TTAATTTAAAACTATTGATTAAATAAAAATGACTACAGCCAATTACTAGA
AGGATTAGAAGTAGGTGGGTTTTGAATTACCTGTTTGAGGGGGAAGAGGA
GAAGGCAGAAAGAGGATAAGGTGCTATGGGATAGGTGCATCATGAATACA
TTGCCATGAGGGTTAAGCAATTGGAGTAAGAGTGACCCAGGTGGATCTTG
TCAAATTATAACTCAGGTTTATTGATAGGGAAGTACATAATAATAGTGTA
GAGGGTAGATATCTGCCCAGCTCTACTGCTTTTTGAAAGGTTTATCATAA
ATATAATGATTTTGTGTTTGCCATCTGGGAACTGAATGATCTGAGGTGGG
GTAGAAACCCCCAACTTTACTATTGTCTTCAGCTCTAGATATTACCACTG
CCTTTGTGTTCCACACTTGGGCATGGTCTCCCTTGTCTGGTTGATAACTT
CCCCCGGACATGTATCTTTAGAAGAGGATTTTGCAGTGAGCTTTAGACGT
AAAGTTCCGACCCCTTTTACTGTCAGCTTTCTTCTTTGTCCGTCTCTCCC
TTTAAATCTCACTTGGCCCCCATGCTTCACAGAGCCTGATGATATTATCA
CTATCCCCGTTTTCTATCCCG
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAACCTTCCCAGGAGGATTCC
TAGACTTATCAACGTTGGAAAGTGAAAGAATTGCCCAGGGGTTGGGGGAC
GACTGTGGAAGAAAAATATATTTCTTACTTAGAAGTTTATTTACCAACCT
CAGAACGGAGTGTGCTTACTGTAGAGACATGTCTAGAAAAATCTGCCAAT
GAGTGAATGAGTGGGGGTTTTATGGAGACACTTCTAGATACATCTATCAG
CCTTAGGACTAAGTAGAGATACTATGGAGATATTTCTAGGCATGTAAGTT
CCTTGAGTTTTGTTTATATTTCTTTCCTCAGGAATGTGCTGGAGATCACG
TGTCACCAAAATGAGGGGGAAAAGCAAGCCAAGGAATCAGATTTAGTATC
AATAGTATCTCAGAGTGACAACTGGGAGTGGATTGGCAGATCACTCAAAA
AGTCTTTGAGGACAGAAGATGAAACTGCTTAATATTTACATCTATCCTTG
AAGGAATGAGAAAACTAAAGCAAATTCTCTATGTGCTTGGGCTCATTCAA
AGGAAATGGACACAAAGTGGACAAGAAACATGAAAGTGACTAAGTGCAGT
GTAACTCATAGATTAATTTCATATCTAGAGCAGCTGGGTAAGCAAATGAA
TTACGTGTCACATGACTCCGGTGGGCACGTTGCTTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_l08.g1 MSMg01no511_l08.g1 CHROMAT_FILE:
MSMg01no511_l08.g1 PHD_FILE: MSMg01no511_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:39 2005
         (461 letters)



>mm_chr2_94804926_94805786
          Length = 861

 Score =  812 bits (420), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaaccttcccaggaggattcctagacttatcaacgttggaaagtgaaagaattgcc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 aaggaaaccttcccaggaggattcctagacttatcaatgttggaaagtgaaagaattgcc 389

                                                                       
Query: 61  caggggttgggggacgactgtggaagaaaaatatatttcttacttagaagtttatttacc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cgggggttgggggacgactgtggaagaaaaatatatttcttacttagaagtttatttacc 329

                                                                       
Query: 121 aacctcagaacggagtgtgcttactgtagagacatgtctagaaaaatctgccaatgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 328 aacctcagaacggagtgtgcttactgtagagacatgtctagaaaaatctaccaatgagtg 269

                                                                       
Query: 181 aatgagtgggggttttatggagacacttctagatacatctatcagccttaggactaagta 240
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 aatgagtgggagttttatggagacacttctagatacatctatcaaccttaggactaagta 209

                                                                       
Query: 241 gagatactatggagatatttctaggcatgtaagttccttgagttttgtttatatttcttt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 208 gagatactatggagatatttctagacatgtaagttccttgagttttgtttatatttcttt 149

                                                                       
Query: 301 cctcaggaatgtgctggagatcacgtgtcaccaaaatgagggggaaaagcaagccaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cctcaggaatgtgctggagatcacgtgtcaccaaaatgagggggaaaagcaagccaagga 89

                                                                       
Query: 361 atcagatttagtatcaatagtatctcagagtgacaactgggagtggattggcagatcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 88  atcagatttagtatcaatagtatctcagagtgacaactgggagtggattggtagatcact 29

                                       
Query: 421 caaaaagtctttgaggacagaagatgaa 448
           ||||||||||||||||||||||||||||
Sbjct: 28  caaaaagtctttgaggacagaagatgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)