BAC Information

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BAC

Clone NameMSMg01-511M06
Chromosome2 (Build37)
Map Location 87,106,983 - 87,107,135
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115
Downstream geneOlfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511M06.T7 (MSMg01no511_m06.b1)MSMg01-511M06.TJ (MSMg01no511_m06.g1)
ACCAG584884AG584885
length733726
length of high quality
(start - end)		153 (72 - 224)347 (76 - 422)
definitionCHROMAT_FILE: MSMg01no511_m06.b1 PHD_FILE: MSMg01no511_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:43 2005CHROMAT_FILE: MSMg01no511_m06.g1 PHD_FILE: MSMg01no511_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACACATTTTGCCGCCGCTCTACCACTCTTATTTGCAGAGGATCCGCGGAA
TTCTTTAATGACACCTCATTGTCTTTATTTTCTGAATCCTGCTTTGTTTT
ACAACAAAGTATTTGCCATGCACTGTATTTCATACATTTTTTTATCATAG
TATGAATTCTGGCTCATTCTATATTATCACAAAATTACCAACTAAATATT
TTATATATCACTTATTTATCACAATACTAGATAATTATCTCACAATACTA
CCACGCTTCATTGCCTATGCCATTTACCGTCAAACAAATAACTTATCCTA
CCGTTCTAATGTAGTACCGTCGTGTGTTCAACAGCTATAAATTTCGGCTT
TACCATTTCCTAGACAATAATCATTATCACATATATAATTGGATCTCCCA
GAAAGAGTTGAAAACATCTACTTCATATGAAAACACATATGGTTCTTATA
TGTATATGCTTGCATGCATACCTGTATTCGTGCCTCTGTATAACGCAATA
ATGTGTGTGTGCGAGTTTGTGTGTCCGCCTGCGTCCATGCGTTAAGGCAA
GTCACATGGATAGATCTTCCCAGTGCCATCTCCCTTCTTTCTCTTGTTTT
AGAAACGCCCCTTTTTTTCTGCCGCCTCTTGTTCAACCTTCCCCGCTTCT
TGACCCCCCGTTATTTCTCCCTTCCTTTTTTTCCGTTCCTCTCACTCTCC
CGTTATGAATTTTCTAAAGACCAAAGCTCCCCG

AATTGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAATGTCTAAACTGCTATTAAGAAG
TACAGAATACCCAAGGAGCTGAAGGGCTTAGCAGCCTAATAGGAGAAACA
ACAATATAAATCAACCAGTACCCTCAGAGCTCTCAGGGACTAAACCACCA
ACCAAAGAAAACACCTGGTGGGATTCATGGCTCTAGCTGCATATGTGACA
GAGAATGGCCTAGTCAGTCATCAGTGGGAGGAGAGGCCCTTGGTCCTGTG
ATGGTTTTATGCTCCAGTATAAGGGACTGACAAGTCCAGGAAGCAGGAGT
GGGTGGGTTGGTGAGCAGGGAGACGGGGCAAGGGTAGGGGGTTTTGGATG
GGAAAACGGGAAGGGGGATAACATTTGAATTGTTAATAAAGAACATTTCT
AATACAAAAAAGAAAGGTTCAAAAAAAGTACAGAATATTATGCGAAATTG
ATAACTACGCATAATTGAACTTTGGTATCCAACACTGCTCCGAACAAATG
CTGGAGGTGTCACTCTACTGTCTATTAAACAGCCCAATGATACTAATCTT
GTAGAGACTTATGCTCCTTTCACTATTTTTCCTGTCACATATTTACCTTT
TTTTTACTAAACCCAATGTCTTTCCTATCCATATATATGTAAACATATTC
CTCCGGGCAGGATACTTTTCGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_m06.b1 MSMg01no511_m06.b1 CHROMAT_FILE:
MSMg01no511_m06.b1 PHD_FILE: MSMg01no511_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:43 2005
         (153 letters)



>mm_chr2_87106783_87107335
          Length = 553

 Score =  273 bits (141), Expect = 4e-78
 Identities = 150/153 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttattttctgaatcctgctttgttttacaacaaagtatttgccatgcactgtatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctttattttctgaatcctgctttgttttacaacaaagtatttgccatgcactgtatttc 294

                                                                       
Query: 61  atacatttttttatcatagtatgaattctggctcattctatattatcacaaaattaccaa 120
           |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 293 atacatttttttatcaaagtatgaattctggtttattctatattatcacaaaattaccaa 234

                                            
Query: 121 ctaaatattttatatatcacttatttatcacaa 153
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ctaaatattttatatatcacttatttatcacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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