Query= MSMg01no511_m19.b1 MSMg01no511_m19.b1 CHROMAT_FILE:
MSMg01no511_m19.b1 PHD_FILE: MSMg01no511_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:45 2005
(648 letters)
>mm_chr2_109795220_109796267
Length = 1048
Score = 1214 bits (628), Expect = 0.0
Identities = 643/648 (99%)
Strand = Plus / Plus
Query: 1 aataatctcactggcattcatgttgcagccacttttggggggaatgctgcttctcacatt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aataatctcactggcattcatgttgcagccacttttgaggggaatgctgcttctcacatt 260
Query: 61 gagtattgtgagccagcacaggagaatcagtgtgaaagttcaataaactagttaggagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtattgtgagccagcacaggagaatcagtgtgaaagttcaataaactagttaggagtg 320
Query: 121 tggggcacgtgcacctaccacagtgtctcggtagagcagcctttacggtatgtcctcatc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggcacgtgcacctaccacagtgtctcggtagagcagcctttacggtatgtcctcatc 380
Query: 181 ttgttcgcatctgcaaacctgttatcactcagacttcgtggcttagaatctgaagctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttcgcatctgcaaacctgttatcactcagacttcgtggcttagaatctgaagctgtt 440
Query: 241 atatttctatcttgtttttagctcccccgcacattgctcatgctgttcctgaacaggcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttctatcttgtttttagctcccccgcacattgctcatgctgttcctgaacaggcct 500
Query: 301 ggccttggagtctcccttccccctttcccttactgcccacccctttgaatacaactgctt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcttggagtctcccttccccctttcccttactgcccacccctttgaatacaactgctt 560
Query: 361 tcttcccatcaagatcagaagtaatgcctaagttgtcatggtaatagaatttgcagatca 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tcttcccatcaagatcagaagtaatgcctaagttgccatggtaatagaatttgcagatca 620
Query: 421 acaacccaaaatgtttattaattaaaactgaacacaccaccaccaacacattaaaaatag 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaacccaaaacgtttattaattaaaactgaacacaccaccaccaacacattaaaaatag 680
Query: 481 tcagaatcctttggtagagattttgtcttattttaaatttagtatacattttgggggcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagaatcctttggtagagattttgtcttattttaaatttagtatacattttgggggcag 740
Query: 541 tatttttagtaggaagaggctttatagttctcatttgttttgatgtgtttgtgttgtttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatttttagtaggaagaggctttatagttctcatttgttttgatgtgtttgtgttgtttg 800
Query: 601 taaagattcatttgttaactacaattcggctgcctctggctttttaaa 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaagattcatttgttaactacaattcggctgcctctggctttttaaa 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_m19.g1 MSMg01no511_m19.g1 CHROMAT_FILE:
MSMg01no511_m19.g1 PHD_FILE: MSMg01no511_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:45 2005
(545 letters)
>mm_chr2_109900825_109901769
Length = 945
Score = 951 bits (492), Expect = 0.0
Identities = 529/544 (97%), Gaps = 7/544 (1%)
Strand = Plus / Minus
Query: 4 ccccagaactcacagaaaaagctgtatggggtggcatgcatctgtaatcccagcactcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ccccagaactcacagaaaaagctgtatggggtggcatgcatctgtaatcccagcactcct 886
Query: 64 tcagcaagatgggaggtgagaacagaattgcccaga--attccccagagggtccgattgc 121
|||||||||||||||||||||||||||||||||| | || || |||||| ||||||
Sbjct: 885 tcagcaagatgggaggtgagaacagaattgcccatacgat----ca-agggtcagattgc 831
Query: 122 agtagacagtacagcagcagaaacaaagaaggcaaaagatgactccccaaagtcatcctc 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 830 agtagacagtacagcagcagaaacaaagaaggcagaagatgactccccaaagtcatcctc 771
Query: 182 tgacttccacacgaatgctgtgccatataagggcatatgcatgcttaccccatcccaaca 241
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 770 tgacttccacacgaatgctgtggcatataagggcatatgcatgcttaccccatcccaaca 711
Query: 242 tacacatgctaaactttttaaagttttcttctctattctatgactcattcctacagtctg 301
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tacacatgctaaacttttttaagttttcttctctattctatgactcattcctacagtctg 651
Query: 302 atttggagggcaaacatgcctaagcaatataagcaataataccagctttcttctttaagc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atttggagggcaaacatgcctaagcaatataagcaataataccagctttcttctttaagc 591
Query: 362 cacctcatacaaccaactgaaaacataccttcacttactcctgtcctttccccttccaat 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 590 cacctcatacaaccagctgaaaacataccttcacttactcctgtcctttccccttcctat 531
Query: 422 tctcgtcccaggagagatctcagaaataactatatattaacattccatagcctcaaagat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctcgtcccaggagagatctcagaaataactatatattaacattccatagcctcaaagat 471
Query: 482 cctgctccaccaatggaattgcctcttgcttatgtttatctcaaccatttaaaatctgcc 541
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 470 cctgctccaccaatggaattgcctcttggttatgtttatctcaaccatttaaaatctgcc 411
Query: 542 cctc 545
||||
Sbjct: 410 cctc 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
