BAC Information

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BAC

Clone NameMSMg01-511O03
Chromosome2 (Build37)
Map Location 18,129,341 - 18,129,827
singlet/doubletsinglet
Overlap geneMllt10
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, LOC641254
Downstream geneDnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O03.T7 (MSMg01no511_o03.b1)MSMg01-511O03.TJ (MSMg01no511_o03.g1)
ACCAG584973AG584974
length718728
length of high quality
(start - end)
451 (71 - 521)600 (72 - 671)
definitionCHROMAT_FILE: MSMg01no511_o03.b1 PHD_FILE: MSMg01no511_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:52 2005CHROMAT_FILE: MSMg01no511_o03.g1 PHD_FILE: MSMg01no511_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTATTTCCCTATGTTTATGGGCATCTCTTTCTTTAGGTTAGGGA
AGTTTTCTATAATTATGTTGAAGATATTTACTGGCCCTTAAGTTTGGAGT
CTTCATTCTCTTCTATAACTATTATCCTTAGGTTTGGTCTTCTCATTGTG
TCTTGTAGTTCCTGCATGTTTTGGGTTAGGAGCTTTTTGCATTTTGTATT
TTCTTTGACTGTTGTGTCAATGTTTTCTATGATATCTTCTGCATCTGAGA
TTCAATCTCTTGTATTCTATTGGTGATGTGTGTGTCTGTGACTTCTGATC
TCTTTCCTAGGTTTTCTATTTTTCAGGGTTGTGTCCTTTTGCGATTTCTT
TACTGCTTCTACTTCCAATTTTAGATCCTGCATGGTTTTGTTCAATTCCT
TCACCTGCTTGGTTGTGTTTTTATGTAATATATTAAGGGGTTCTTTGTTT
TCTATGTAAGGGCTTCTAGCTGTCTACCTGTGTTCTCTTGTATTTCTTTA
AGGGATTTATGTATGTCCTTTGCAAAGTCCCCTATTATCATCATATCAGA
CACATACACATACTTTTTAATTATTGGCCTGTTAATTTTGACATTCTTGC
TGTGCCTCTTTGATTCTCTTTTTAATTCTTCAAAGTTTTTTTTTTCTACC
TTTTATCATATTTTACCT
ATTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGATCCATCTGCCTTCTGCAACCAAAG
TGCTGGGATGAAAGATGTGTGCTGCTGCTGTCATCCAGCTGAGTTGCCCA
TTTTTAAAACACAGTAGAGGCAAATACAGAAGTGTCTTCAAATGAGGCTG
TCCGTGAAGAACACACAACAGAAACAGCAGCAGTTGGATGCTGTGCTGCT
TGGCTTTGTTAACACACAAGCAGGTTATCTGAAGAGGGACCCTCAATTGA
GAAAATACTTCAATCAGATTGGCCTATACGCACTGTCTTGACTAATGAAT
GATGCAGGAGAGTCTAGGCCATTGTAGACAGCACATGGTTCCGAGATGGC
TAAGAAACAGCAACTTCTAAGACCCACATTCACAAAGGAGGAGCCCGGGA
TAGCCACAACACCAGACACTGACAAAAGAGAAACCTTGTCAAACAAAGGA
CTTACGGGTGTGAGCTGCTGGGAGTTTAACAGCTGCTGGAACTGCTGCTG
CTGGATAAACATCTGTCTCTGCTGGTCCGACAGCAGCCCTAGTCCCGAGG
CACTGAAAAACCATCACAGCCTTACTTTCTACTGTAACCTCCTCAAGGGG
ATGTCAAAGGCAGCTTCTTCATTGGGGTGTTAACAAATTCATTTGAACTA
CAGGGCTTCATTATGTACAAATTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o03.g1 MSMg01no511_o03.g1 CHROMAT_FILE:
MSMg01no511_o03.g1 PHD_FILE: MSMg01no511_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:52 2005
         (600 letters)



>mm_chr2_18128828_18129827
          Length = 1000

 Score =  913 bits (472), Expect = 0.0
 Identities = 484/488 (99%), Gaps = 2/488 (0%)
 Strand = Plus / Minus

                                                                        
Query: 114  tcttcaaatgaggctgtccgtgaagaacacacaacagaaacagcagcagttggatgctgt 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tcttcaaatgaggctgtccgtgaagaacacacaacagaaacagcagcagttggatgctgt 941

                                                                        
Query: 174  gctgcttggctttgttaacacacaagcaggttatctgaagagggaccctcaattgagaaa 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  gctgcttggctttgttaacacacaagcaggttatctgaagagggaccctcaattgagaaa 881

                                                                        
Query: 234  atacttcaatcagattggcctatacgcactgtcttgactaatgaatgatgcaggagagtc 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 880  atacttcaatcagattggcctatacgcactgtcttgactaatgaatgatgcaggagaatc 821

                                                                        
Query: 294  taggccattgtagacagcacatggttccgagatggctaagaaacagcaacttctaagacc 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  taggccattgtagacagcacatggttccgagatggctaagaaacagcaacttctaagacc 761

                                                                        
Query: 354  cacattcacaaaggaggagcccgggatagccacaacaccagacactgacaaaag-agaaa 412
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 760  cacattcacaaaggaggagcccgggatagccacaacaccagacactgacaaaagta-aaa 702

                                                                        
Query: 413  ccttgtcaaacaaaggacttacgggtgtgagctgctgggagtttaacagctgctggaact 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  ccttgtcaaacaaaggacttacgggtgtgagctgctgggagtttaacagctgctggaact 642

                                                                        
Query: 473  gctgctgctggataaacatctgtctctgctggtccgacagcagccctagtcccgaggcac 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641  gctgctgctggataaacatctgtctctgctggtccgacagcagccctagtcccgaggcac 582

                                                                        
Query: 533  tgaaaaaccatcacagccttactttctactgtaacctcctcaaggggatgtcaaaggcag 592
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 581  tgaaaaaccatcacagccttactttctactgtaacctcctcagggggatgtcaaaggcag 522

                    
Query: 593  cttcttca 600
            ||||||||
Sbjct: 521  cttcttca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)