BAC Information

Click to search

BAC

Clone NameMSMg01-511O10
Chromosome2 (Build37)
Map Location 140,164,752 - 140,165,106
singlet/doubletsinglet
Overlap geneSel1l2
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik
Downstream gene2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O10.T7 (MSMg01no511_o10.b1)MSMg01-511O10.TJ (MSMg01no511_o10.g1)
ACCAG584987AG584988
length731735
length of high quality
(start - end)
43 (194 - 236)355 (75 - 429)
definitionCHROMAT_FILE: MSMg01no511_o10.b1 PHD_FILE: MSMg01no511_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:53 2005CHROMAT_FILE: MSMg01no511_o10.g1 PHD_FILE: MSMg01no511_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCATTTGCGGCCGCCATACCACTCTTATTTCCCAGAGGATCCGCGTGA
TTCTGTTAGAGGCCACAAAAATAGCCCGGGAGTCAACAGGCGGTCTACAC
AGCTACAAAATGATATAGATATGGGATTCCCTTTGCACCAGGCTCTGGTC
CAAGGTGCCTCAAGACATTCTACTAATTTGGCTAAGGTAAGAGGTAATGC
AGGGGCCAATCGAACCTCCCTCATTGTTCCTTGAAAGGCTCATGGAAGCC
CTCCTGCGGTTCACTCCCTTTGATTCCATCTCAGAAGTCCAGAAGGCCTC
ACGTGGTCATGGCCTTCATAAGGTAGTCCGCTCCATTATATCATACAGAA
ACTTCAGAGATTATAAGGTGTATTACTAAAGGGAGACAGTTACCCGATCC
ATTGAAAGAGGCACATAAAGTGTGTGTGAGATAGAGAGAGATAGAGAGAT
AGAGATATAGACATATAGAGGCTACATTCCTATCCCCTATTTTACATGCG
ATATCTTATACTTGACAGATATTTGCCCTCCGCCGGTATTAGAAAACATA
AAGACCGGACTCTAGACTTGTTTTCCGGGCAATAGAACACCGAGCCTTTT
CTATTAGGCCTCCCCCGCGCCTTACTGAAGCTTCTTTTTTGGCACATACC
CCTCTATAATGCCACTTATTGTCCCCACTAATTCCGCAATAATTACTGTA
ACCCTGATTTCCTCCCCAACGTCTCCTAGAA
AATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCAAGCAGAGCTATATAGAAGA
CATCATCTCAACTCAGAAACTAGCAAAGGAAAGGCAGAAACGGGGAAAGA
AAGGAATGGACAGAAACACAGAATTTGGAACTTTAGAACGGAGTGTTTTC
TAATTTAGTTTTGAGGGAAGGACTCTCAGAAAAGATGGTGTTTCAAGAAC
TACATGAAAGAGGTAAGGTGAGGGGGCAGCCATGGCATTGTTATTAAGAA
AGGATAGAAATGACTGGAGAGCTGGCTCAGTGGAGAAAATTACTTAACGC
TCTTGCAAAGGGCCTGAGTTTGGTTCCCAGCAGCCACATTAGGCATCTTA
CATATACCTGGAGCTCTAGCTCCTGAGGGATCTGACACCTCCAGCCTCCA
CTGTGTTCCTGCACTTCTATGAATACATGTGCACACAGATATGCACATAT
ATTCATAATTAAAGCCCATAAAAGAAATCTTTTTTTTAAGCGAGAAAGGA
CAAAAAGGTGTGAGAATGCCCAAGGTTTATGAGGAACGAATACAGAGCCC
AGAATATTTGGAATAGCGCTATGCAGACAACTGTATGGAGATTAGACAGG
TCAGATAAGAAAATTAACCTAACCAAGCTACTACTAACCCGTGGTGCTAT
AACCCTGATCCCGACAAATAAGTCATTGCTAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o10.g1 MSMg01no511_o10.g1 CHROMAT_FILE:
MSMg01no511_o10.g1 PHD_FILE: MSMg01no511_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:53 2005
         (355 letters)



>mm_chr2_140164552_140165306
          Length = 755

 Score =  640 bits (331), Expect = 0.0
 Identities = 349/355 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcaagcagagctatatagaagacatcatctcaactcagaaactagcaaaggaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcaagcagagctatatagaagacatcatctcaactcagaaactagcaaaggaaagg 260

                                                                       
Query: 61  cagaaacggggaaagaaaggaatggacagaaacacagaatttggaactttagaacggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaacggggaaagaaaggaatggacagaaacacagaatttggaactttagaacggagt 320

                                                                       
Query: 121 gttttctaatttagttttgagggaaggactctcagaaaagatggtgtttcaagaactaca 180
           |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gttttctaatttagtttccagggaaggactctctgaaaagatggtgtttcaagaactaca 380

                                                                       
Query: 181 tgaaagaggtaaggtgagggggcagccatggcattgttattaagaaaggatagaaatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaagaggtaaggtgagggggcagccatggcattgttattaagaaaggatagaaatgac 440

                                                                       
Query: 241 tggagagctggctcagtggagaaaattacttaacgctcttgcaaagggcctgagtttggt 300
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagagctggctcagtggttaaaattacttaacgctcttgcaaagggcctgagtttggt 500

                                                                  
Query: 301 tcccagcagccacattaggcatcttacatatacctggagctctagctcctgaggg 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccagcagccacattaggcatcttacatatacctggagctctagctcctgaggg 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)