BAC Information

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BAC

Clone NameMSMg01-511O11
Chromosome2 (Build37)
Map Location 84,805,567 - 84,805,870
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3
Downstream genePrg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O11.T7 (MSMg01no511_o11.b1)MSMg01-511O11.TJ (MSMg01no511_o11.g1)
ACCAG584989AG584990
length835743
length of high quality
(start - end)
102 (127 - 228)306 (80 - 385)
definitionCHROMAT_FILE: MSMg01no511_o11.b1 PHD_FILE: MSMg01no511_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:53 2005CHROMAT_FILE: MSMg01no511_o11.g1 PHD_FILE: MSMg01no511_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCAGCGCGAAACGACTCACTATTCGTAGAGGATCCGCGGAAT
TCACTCTGTACCACCATGCTGGTCTCTAACTCAGAAATCCACCTACCTCT
GCCTCCCGAGTGCTGGGATTAAAGGTGTGCACCACCACGCTCCGGCTTCT
TACTTATAAAAAACATATATTGAACACTTAATTCTTTCTAGGTTGCTTGC
TCCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTTCTCTCCT
CTTATCCCCTATCCTCTTTTCTCCTTTCTTCTTCACCTCTCCCCTTTCCC
TCTCTTCCACTTTTTTTTTTCCTTTACTTTCACTTTCCCCTTACATCCCC
TCCCTTTTTTTTTACTTTTCTCACTCTCCCCCTCTTTCTTTTTTTTTTGT
TTCCCACCTTTCTTCCCTCTTTTTTATTTTACACCCCCCCTTCCCTTCTT
ACCTTCTTCTCTTTCTTACCTCTCTTCTCTTTCTTTCTTTCTCTCATATA
ACCCCTCTTTTTTTATCTTTCCCCTTTTTCTATTTTTTTTTTTCCTTTTT
TTCCTTTTTCCCTTTTTCCTACACCTTTCTCTCTATACTCTTTTTTTCCT
AACCTTTCTCTTTTCCCCCTTCCCATTTTTTCCCTTCTCCTCTTTCCCCC
CTTTTATCCCCCCTTTTCCCTTTTCCTTCCCTCTATCTCTTCCCTCTTTC
TTATTCCCTTTCCTTTTCCCCTCTTTTCCCTTTTTCCTTTTTTTTTTATA
CCCCTTTTTATTTTTTTCCACTTTTATCTTTTCGTGTCATATTTTAACTC
TCCATCATCCCCTTATTTTCCTTCCATTTTCCCCC
ATTGATTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCACTCACAAGGAGACA
TTCAAGGGCTGTTTTGCTTGTTCGTTTTGGCAGTGTTTGCTGCATTGTGT
AGCTCAAGATGACCTCGACCTTGTGACCCTTCACCCTTCACCTCTTGTGC
TAGGGTTACAATCCAGTGCTGTCATTTTCATCCAGCCTGAGTATCTTTTT
CATACAAGTTTATCACCTTGTGGATCAAGTCAGTTGCTCCCACTGAGGGT
CTGACAGATACGCATTTGGAATTGTAATTCTGTGCTTGCCAGCTGCAGGC
TCAGAGCTATGACTGTTCCTGTGTGAAAACTCATAGTATGTTACCGATAG
GTAAAGATGGAGAAATCGGAGTCCAGAAGGTGAATGACCCGCAGGAGATA
ACGATGGGTAGGGTAGAACTTACTCAGAGGAAGAGATCGAACTATGTCTC
ACTTAAGTGGAGCATACCTTTGTTAGGTGATTTTTGCATCCTTCATGAAA
ACGCGGTGTGTCATTAATTATGGACCTACTGTGCGGCAGGGCCAGCATAT
TCATAGGGAGCCCCACTGATTTTCATTCCTCACTGAGCATGTATGATAAC
CTCCATTTTCTTGTTTTATGGATGAATATATCCAACTCCACATAAACCGA
TGGTTTGTCCTACTCCTCATGGAACCCCTGGCCCGAAGTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o11.g1 MSMg01no511_o11.g1 CHROMAT_FILE:
MSMg01no511_o11.g1 PHD_FILE: MSMg01no511_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:53 2005
         (306 letters)



>mm_chr2_84805236_84805941
          Length = 706

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtcactcacaaggagacattcaagggctgttttgcttgttcgttttggcagtgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 actgtcactcacaaggagacattcaagggctgttttgcttgttcgttttggcagtgtttg 576

                                                                       
Query: 61  ctgcattgtgtagctcaagatgacctcgaccttgtgacccttcacccttcacctcttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctgcattgtgtagctcaagatgacctcgaccttgtgacccttcacccttcacctcttgtg 516

                                                                       
Query: 121 ctagggttacaatccagtgctgtcattttcatccagcctgagtatctttttcatacaagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 515 ctagggttacaatccagtgctgtcattttcatccagcctgagtatcttttacatacaagt 456

                                                                       
Query: 181 ttatcaccttgtggatcaagtcagttgctcccactgagggtctgacagatacgcatttgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 455 ttatcaccttgtggatcaagtcagttgctcccactgagggtctgacagatactcatttgg 396

                                                                       
Query: 241 aattgtaattctgtgcttgccagctgcaggctcagagctatgactgttcctgtgtgaaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 395 aattgtaattctgtgcttgccagctgcaggctcagagctatgactgtttctgtgtgaaaa 336

               
Query: 301 ctca 304
           ||||
Sbjct: 335 ctca 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)