BAC Information

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BAC

Clone NameMSMg01-511P19
Chromosome2 (Build37)
Map Location 110,449,666 - 110,450,203
singlet/doubletsinglet
Overlap geneSlc5a12
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511P19.T7 (MSMg01no511_p19.b1)MSMg01-511P19.TJ (MSMg01no511_p19.g1)
ACCAG585052AG585053
length760736
length of high quality
(start - end)
560 (71 - 630)538 (73 - 610)
definitionCHROMAT_FILE: MSMg01no511_p19.b1 PHD_FILE: MSMg01no511_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:59 2005CHROMAT_FILE: MSMg01no511_p19.g1 PHD_FILE: MSMg01no511_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAATTTGTGGCGGCTAAAAGATCACTACTTCTAGACAGATCCGCGGAA
TCTTTGTTCTCCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGTTCTTATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTTGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGATTTTATCACAATTGCTCTGT
AGTAAAGCTTTAGGTCACGCATGGTGATTCCACCAGAGGGTTTTTTTATC
CTTGAGAAGAAGTTTTGCTATCCTAAGTTTTTTTTGTTATTCCAGATGAA
TTTGCAGATG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCTTTGAAAATATATATCTGATACC
TTGTGGGGGAGATACTCTAGAGGTCACTGTATATGTGGAGTTCGAAAAGT
GTACTTAATACTGAAAATAGTATAAAACTATTACTAGATTTTGCTTTACA
AATCTTCTTGCTTATAAACACACAGTTCAGTTGCATGTGGTTTGTTTAGG
TGTTTCAATTTTGCTTTCCAGCATTTGAAAGTATTTGAAATGATGTCAGA
TTTGCTATTGTACATTTATAAGTTCTCCATATGTCTTCTGTGTTGAAGAC
AAGTTCATAAAGCAGAAGATCTCAGCATAAGAGTAAAAGGTGTCTATGAC
TACATTGATATGTATACAACCCTTTCGAGATAATAAAATCCTGGAAATAA
AAATAAAGGAAAAATAGCAACACAAAAGGTACTTTTCTCACTGACAGCTC
CCATATTGAAGGAGCATAGCAGTGACAGTAATTGAACTGGGAAGTACTAG
TTCTTAAAATTAACTAAAAGCAACAACAAAACTGGACCTAGGATCTAAGC
TACAGAATCAGCGAAGGTCAAATCTGCTGTTACTTTTTTGTAGAGAAGTT
TCCTTTACTGGTTTGTAACGACTTTTCTTCTTTTTTAGTGACTGGGTTTA
ATCTATGGGCCTCTGTGTTTGCAACAGAATCGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_p19.g1 MSMg01no511_p19.g1 CHROMAT_FILE:
MSMg01no511_p19.g1 PHD_FILE: MSMg01no511_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:00 2005
         (538 letters)



>mm_chr2_110449466_110450403
          Length = 938

 Score = 1017 bits (526), Expect = 0.0
 Identities = 535/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctttgaaaatatatatctgataccttgtgggggagatactctagaggtcactgtat 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctttgaaaatatatatctgatatcttgtgggggagatactctagaggtcactgtat 260

                                                                       
Query: 61  atgtggagttcgaaaagtgtacttaatactgaaaatagtataaaactattactagatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtggagttcgaaaagtgtacttaatactgaaaatagtataaaactattactagatttt 320

                                                                       
Query: 121 gctttacaaatcttcttgcttataaacacacagttcagttgcatgtggtttgtttaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttacaaatcttcttgcttataaacacacagttcagttgcatgtggtttgtttaggtg 380

                                                                       
Query: 181 tttcaattttgctttccagcatttgaaagtatttgaaatgatgtcagatttgctattgta 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaattttgctttccagtatttgaaagtatttgaaatgatgtcagatttgctattgta 440

                                                                       
Query: 241 catttataagttctccatatgtcttctgtgttgaagacaagttcataaagcagaagatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttataagttctccatatgtcttctgtgttgaagacaagttcataaagcagaagatct 500

                                                                       
Query: 301 cagcataagagtaaaaggtgtctatgactacattgatatgtatacaaccctttcgagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcataagagtaaaaggtgtctatgactacattgatatgtatacaaccctttcgagata 560

                                                                       
Query: 361 ataaaatcctggaaataaaaataaaggaaaaatagcaacacaaaaggtacttttctcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaatcctggaaataaaaataaaggaaaaatagcaacacaaaaggtacttttctcact 620

                                                                       
Query: 421 gacagctcccatattgaaggagcatagcagtgacagtaattgaactgggaagtactagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacagctcccatattgaaggagcatagcagtgacagtaattgaactgggaagtactagtt 680

                                                                     
Query: 481 cttaaaattaactaaaagcaacaacaaaactggacctaggatctaagctacagaatca 538
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 cttaaaattaactaaaagcaacaacaaaactggacctaggaactaagctacagaatca 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)