BAC Information

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BAC

Clone NameMSMg01-512F22
Chromosome2 (Build37)
Map Location 124,084,551 - 124,248,484
singlet/doubletdoublet
Overlap geneLOC100043360
Upstream gene4930517E11Rik
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F22.T7 (MSMg01no512_f22.b1)MSMg01-512F22.TJ (MSMg01no512_f22.g1)
ACCAG585345AG585346
length762759
length of high quality
(start - end)		600 (41 - 640)570 (69 - 638)
definitionCHROMAT_FILE: MSMg01no512_f22.b1 PHD_FILE: MSMg01no512_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:30 2005CHROMAT_FILE: MSMg01no512_f22.g1 PHD_FILE: MSMg01no512_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,084,551 - 124,085,146)(124,247,915 - 124,248,484)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGAGGCAGTGTTCCGACTCATTATATACAGCAGTTTTCATAACTCATGC
AAATGCTACATCCAGCTTTTGGATAGATAGAGGGGTATTTTTAGGGATTT
TCATCAATACTTAATAAAGCAATTTGTACTACAAACAGAACGTTGTGATA
AAGAATTCAAGAGCAAGGAAGTGCCATTAAGTCAGCCCAGGGCTCCACAG
ACCTGGCTTCTGATTATAACACCTCAAGACTCAGGGATACACATTTTGGC
ATCTCTTAGTAGGTATTATACTGAGCCATTCTGCTGCGAAGGCCATGGTG
GTCTTTACTCTGGGAACTGGGAATTAAGGGTTCCACTTTAATTCCAATAA
CCAAATTGCTATGTGAATTTGTAGAAATTCATATCTTTTTGTTTCAATAG
AGAAAAGAAAGTACTACCTTGCCTCTACTTTCCTGAGATAATTACTTACA
GTATGCAGTGGTTTCGACAGGAAATGTATCTTTCATTTATTTGCATCTTA
CATCAAGCTTGCAAGCTCAGAGGTCATTGCTCATGATGTCTGTCTGTACC
TCTACAATAGAAATAGACTTACATATGTTAGAAGCTCAGCAACAAGAACC
AAAAAGGAATAAAAAGGTGACCTAGACAATGAAGATGGAATGGAAAAAAT
TACATACGTGACCCCCAGCCATGGNTGTTTGNTTCTACAAGCACAGAATG
TACCTCTTGTCN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAATCCTCTTATCTATGCCTCTCAAATGCTA
GATTACAGGAATGGACCACCATCCCAGACTTTCCGCCTAGATTCAGGTTC
TCCTTTTGGATATTTTCAGGCAACTCATCAGTTTAATGTCTTAGTATCTA
CAGACTCACAAGCAGGTAGGAAAGGGAAACATTATTTCAAGGATAAAGAA
TTTAGACACTAAGGAAGTCTCAATTTTATTATAGCCATTATATGGGTTAT
CCTCAGCAGCACTTAAAATATTAATAGCCTATGAGGACATTTTAAAAAAT
TTTACTTGCAAATGTGATCTCTAAACCAGTTGATATGTAGGTGAAACATT
CTCATCAGTATCCTTCCTCACTGTTTAAATCTTCATCAAGTATTGCTAGC
ACATGACGAAATCAGGATGCAATTGTGTGAGAAAGGCACCATTATCTATC
TCTGTATCTTCAATGACCCAATGTACAATGAGAACATTAAAGTGTACATA
TGGTAAATTTTATGGAATTTATTTGTCTTTGCATTTGGAATACAACCATT
CACAAAATACAGCCTACCAAAAGATTTCAGTTGCACTGAGGTAGTCGATT
GGNCAGGTTTCCTTCTCATTTCTTCTTTCACAGATAATAGCCTTGAAGAC
ACATCTATATGCAGGTCTACTACCAGAATATGTGGATTGAGTCAAGAAGA
AGATTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f22.b1 MSMg01no512_f22.b1 CHROMAT_FILE:
MSMg01no512_f22.b1 PHD_FILE: MSMg01no512_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:30 2005
         (600 letters)



>mm_chr2_124084347_124085346
          Length = 1000

 Score = 1137 bits (588), Expect = 0.0
 Identities = 594/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaggcagtgttccgactcattatatacagcagttttcataactcatgcaaat 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgaggcagtgttccgactcattatatacagcagttttcataactcatgcaaat 264

                                                                       
Query: 65  gctacatccagcttttggatagatagaggggtatttttagggattttcatcaatacttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctacatccagcttttggatagatagaggggtatttttagggattttcatcaatacttaa 324

                                                                       
Query: 125 taaagcaatttgtactacaaacagaacgttgtgataaagaattcaagagcaaggaagtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaagcaatttgtactacaaacagaacgttgtgataaagaattcaagagcaaggaagtgc 384

                                                                       
Query: 185 cattaagtcagcccagggctccacagacctggcttctgattataacacctcaagactcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattaagtcagcccagggctccacagacctggcttctgattataacacctcaagactcag 444

                                                                       
Query: 245 ggatacacattttggcatctcttagtaggtattatactgagccattctgctgcgaaggcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggatacacattttggcatctcttagtaggtattatactgagccattctgctgcgaaggcc 504

                                                                       
Query: 305 atggtggtctttactctgggaactgggaattaagggttccactttaattccaataaccaa 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggtggtctttactctgggacctgggaattaagggttccactttaattccaataaccaa 564

                                                                       
Query: 365 attgctatgtgaatttgtagaaattcatatctttttgtttcaatagagaaaagaaagtac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attgctatgtgaatttgtagaaattcatatctttttgtttcaatagagaaaagaaagtac 624

                                                                       
Query: 425 taccttgcctctactttcctgagataattacttacagtatgcagtggtttcgacaggaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taccttgcctctactttcctgagataattacttacagtatgcagtggtttcgacaggaaa 684

                                                                       
Query: 485 tgtatctttcatttatttgcatcttacatcaagcttgcaagctcagaggtcattgctcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtatctttcatttatttgcatcttacatcaagcttgcaagctcagaggtcattgctcat 744

                                                                   
Query: 545 gatgtctgtctgtacctctacaatagaaatagacttacatatgttagaagctcagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gatgtctgtctgtacctctacaatagaaatagacttacatatgttagaagctcagc 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_f22.g1 MSMg01no512_f22.g1 CHROMAT_FILE:
MSMg01no512_f22.g1 PHD_FILE: MSMg01no512_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:30 2005
         (570 letters)



>mm_chr2_124247649_124248618
          Length = 970

 Score = 1048 bits (542), Expect = 0.0
 Identities = 563/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatcctcttatctatgcctctcaaatgctagattacaggaatggaccaccatcccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ttaatcctcttatctatgcctctcaaatgctagattacaggaatggaccaccatcccaga 777

                                                                       
Query: 61  ctttccgcctagattcaggttctccttttggatattttcaggcaactcatcagtttaatg 120
           ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 776 ctttctgcctagattcaggttgtccttttggatattttcaggcagctcatcagtttaatg 717

                                                                       
Query: 121 tcttagtatctacagactcacaagcaggtaggaaagggaaacattatttcaaggataaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tcttagtatctacagactcacaagcaggtaggaaagggaaacattatttcaaggataaag 657

                                                                       
Query: 181 aatttagacactaaggaagtctcaattttattatagccattatatgggttatcctcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aatttagacactaaggaagtctcaattttattatagccattatatgggttatcctcagca 597

                                                                       
Query: 241 gcacttaaaatattaatagcctatgaggacattttaaaaaattttacttgcaaatgtgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcacttaaaatattaatagcctatgaggacattttaaaaaattttacttgcaaatgtgat 537

                                                                       
Query: 301 ctctaaaccagttgatatgtaggtgaaacattctcatcagtatccttcctcactgtttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctctaaaccagttgatatgtaggtgaaacattctcatcagtatccttcctcactgtttaa 477

                                                                       
Query: 361 atcttcatcaagtattgctagcacatgacgaaatcaggatgcaattgtgtgagaaaggca 420
           |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 476 atcttcatcaagaattgctagcacatgacgaaatcagggtgcaattgtgtgagaaatgca 417

                                                                       
Query: 421 ccattatctatctctgtatcttcaatgacccaatgtacaatgagaacattaaagtgtaca 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 416 ccattatctatctctgtatcttcaatgacccaatggacaatgagaacattaaagtgtaca 357

                                                                       
Query: 481 tatggtaaattttatggaatttatttgtctttgcatttggaatacaaccattcacaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tatggtaaattttatggaatttatttgtctttgcatttggaatacaaccattcacaaaat 297

                                         
Query: 541 acagcctaccaaaagatttcagttgcactg 570
           ||||||||||||||||||||||||||||||
Sbjct: 296 acagcctaccaaaagatttcagttgcactg 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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