Query= MSMg01no512_i19.b1 MSMg01no512_i19.b1 CHROMAT_FILE:
MSMg01no512_i19.b1 PHD_FILE: MSMg01no512_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:45 2005
(474 letters)
>mm_chr2_91096619_91097492
Length = 874
Score = 909 bits (470), Expect = 0.0
Identities = 473/474 (99%)
Strand = Plus / Plus
Query: 1 agctttctctgcacccggggagcagatcctatggctcgcatcccgagccacctggcgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttctctgcacccggggagcagatcctatggctcgcatcccgagccacctggcgcag 260
Query: 61 ggatgcctgcagtccccgctgcggggatgctgtcggtggggttggggcggcggctccgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgcctgcagtccccgctgcggggatgctgtcggtggggttggggcggcggctccgcg 320
Query: 121 gagagggcgggcccggggggccgggcttcccgggggagggcccgaagcgctccaggaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagggcgggcccggggggccgggcttcccgggggagggcccgaagcgctccaggaggc 380
Query: 181 ggtggcccggacccgggagtggtaggactccgaactgagcgtggccagatccccctaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggcccggacccgggagtggtaggactccgaactgagcgtggccagatccccctaacc 440
Query: 241 caccgagggcccctgagaggacacggtgagtgctttggagggggagctggggggcacggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccgagggcccctgagaggacacggtgagtgctttggagggggagctggggggcacggc 500
Query: 301 ggcggcatcgtggctctagcttgctctttggtccttcgactcctgaagttggcaatggga 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcggcatggtggctctagcttgctctttggtccttcgactcctgaagttggcaatggga 560
Query: 361 cggactcccgcgccggagaccccggccattggctgccactgagcgcaaggccatctcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggactcccgcgccggagaccccggccattggctgccactgagcgcaaggccatctcatc 620
Query: 421 tcctacgctaattaggcgtttcttcaggccagccaggggaaatggggcgtccag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctacgctaattaggcgtttcttcaggccagccaggggaaatggggcgtccag 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_i19.g1 MSMg01no512_i19.g1 CHROMAT_FILE:
MSMg01no512_i19.g1 PHD_FILE: MSMg01no512_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:45 2005
(640 letters)
>mm_chr2_91264065_91265103
Length = 1039
Score = 1222 bits (632), Expect = 0.0
Identities = 638/640 (99%), Gaps = 1/640 (0%)
Strand = Plus / Minus
Query: 1 tttaatcactcacataaattaaagcttattcctttgcatttacaaagaagtacaaaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tttaatcactcacataaattaaagcttattcctttgcatttacaaagaagtacaaaggag 780
Query: 61 cactctccaggcaagaagagccttggacttactgagtctcattgaagtttgatcaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 cactctccaggcaagaagagccttggacttactgagtctcattgaagtttgatcaactgt 720
Query: 121 aaggattttccggggttggtggaacacttaaccacagagagaacaccagactgataagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aaggattttccggggttggtggaacacttaaccacagagagaacaccagactgataagag 660
Query: 181 tgcaggtgaggaccaagcagagcaattaaggagagcttcacccttgctctatggctgggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgcaggtgaggaccaagcagagcaattaaggagagcttcacccttgctctatggctgggc 600
Query: 241 ggaattcccacacagtagagcttctcgcttttgtctctgtggctttttatttaactccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggaattcccacacagtagagcttctcgcttttgtctctgtggctttttatttaactccta 540
Query: 301 cccttcacccagattaaagaaagaaccagcactttccagttccacttcgtgacctgcgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cccttcacccagattaaagaaagaaccagcactttccagttccacttcgtgacctgcgaa 480
Query: 361 ggggtggggtgaatactttgtagtagagcagttcttggttagacactcagaaatccatag 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggggt-gggtgaatactttgtagtagagcagttcttggttagacactcagaaatccatag 421
Query: 421 acaagtcctgacttcacataggtgccaattggtatgcaggcagggacaggacagagaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acaagtcctgacttcacataggtgccaattggtatgcaggcagggacaggacagagaggt 361
Query: 481 gctcacacacgtgacatccatgtgtgtacatgtatgcccacagttcacatagacaagact 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gctcacacacgtgacacccatgtgtgtacatgtatgcccacagttcacatagacaagact 301
Query: 541 ggaccacacccctcaggtgattttgctacactcaagccttatgttctgtgtaaaataaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggaccacacccctcaggtgattttgctacactcaagccttatgttctgtgtaaaataaat 241
Query: 601 gtgacttttacttctgtggctgactgtgacgtgttagtga 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtgacttttacttctgtggctgactgtgacgtgttagtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
