XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
CCCTCTCTTTCTTTCTCTTCCTTTATTTATTTTTATTTATTTATTTATTT
ATTTATTTATTTATTTTTGGTATTAGGTCAGACCTGAAAGTCATCCATAG
TGCTTTCTGCCACTTTTTATTTAATTAAAATGTAAGAGACTAGGAAGTGT
TATCTTGGTACTGGGAAGTGCGAACGTGAACTTTAGTGAGCTTCCTGTGT
GCTTTGGCATCATGAGATTCTCATATTGAGGCAGGGAAATCTGGGGCCTG
GCAAGGGTGTCACCTAGTCTGGACTCTGTAGTTTCACTTGGTTCTCAGCT
GATGATCAGCTATTCCAGCACAATCGAGGAAGTATTACAGCATCCCAGCT
GGCAGTGTTGCTCGATATAGAAAGTCACTGGCCTGATCCTGGAACCTGAG
TTCAACCCCTAGACCACACATCTAATGGTGGAAAGAGAACAACTCTCTCG
GGTTGTGCTCCCCCTACACACACACACACACACACACACACAAACACACA
CATACACACACACACACACACACACACNCTCTTGANAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAATGCNATGAGCAATACCTTTTGAGCATCT
GACACTCTCTGCCCCATCCCTTTTGGTCTGCTGGATATTTATGAAGCTTA
AGTAATCCCTGAGGTCCACATCTTAATGTTGAAGAGCACCTGTTTACCTG
GGTCCCTCANTATTGA

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGAGAGTTTG
GCTGGGTATAGTAGCCTGGGCTGGAATTTGTGTTCTCTTAGTATGTGTAT
AACATCTGTCCAGGCTCTTCTGGCTTTCATAGTCTCTGGTGGAAAATCTG
GTGTAATTCTGATAGGCTTGCCTTTATATGTTACTTGACCTTTTTCCCTT
ACTGCTTTTAGTATTCTATCTTTATTTAGTGCATTTGATGTTCTGATTAT
TATGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTTT
AGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGATTTGGGAAGTTT
TCTTCAATAATTTTGTTGAAGATGTTTGCTGGTCCTTTGAGTTGAAAATC
TTCATTCTCATCCACTCCTATTATCCATAGGTTTGGTCCTCTCATTGTGT
CCTGGATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTCCATTT
TCTTTGATTGTTGTGCCGATGTTCTCTATGGAATCGTCTGCACCTGAGAT
TCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTGGCATCTATGATCC
AGATTTCTTTCCTAGTGTTTCTATCTCCAGCGNTGCCTCACTTTGGGTTT
TCTTTATTGTGTCTACTTCCCTTTTTAAGTCTAGAATGTTTTTGTCATTT
CTATCACTGTTTCGATGGGTTTCCTGT

Query= MSMg01no512_l22.b1 MSMg01no512_l22.b1 CHROMAT_FILE:
MSMg01no512_l22.b1 PHD_FILE: MSMg01no512_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:01 2005
         (588 letters)



>mm_chr2_140134794_140135781
          Length = 988

 Score =  936 bits (484), Expect = 0.0
 Identities = 520/538 (96%), Gaps = 14/538 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctccctctctttctt--tctcttcctttatttatttttatttatttatttat 61
           |||||||||||||||||||||||  |||||||||||||||||||       |||||   |
Sbjct: 628 ggaattctctccctctctttctttctctcttcctttatttattt-------tttat---t 579

                                                                       
Query: 62  ttatttatttatttatttttggtattaggtcagacctgaaagtcatccatagtgctttct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttatttatttatttatttttggtattaggtcagacctgaaagtcatccatagtgctttct 519

                                                                       
Query: 122 gccactttttatttaattaaaatgtaagagactaggaagtgttatcttggtactgggaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccactttttatttaattaaaatgtaagagactaggaagtgttatcttggtactgggaag 459

                                                                       
Query: 182 tgcgaacgtgaactttagtgagcttcctgtgtgctttggcatcatgagattctcatattg 241
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tacgaacgtgaactttagtgagcttcctgtgtgctttggcatcatgagattctcatattg 399

                                                                       
Query: 242 aggcagggaaatctggggcctggcaagggtgtcacctagtctggactctgtagtttcact 301
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 398 aggcagggaaatctggggcctgggaagggtgtcacctagtctggactctgtagtttcact 339

                                                                       
Query: 302 tggttctcagctgatgatcagctattccagcacaatcgaggaagtattacagcatcccag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tggttctcagctgatgatcagctattccagcacaatcgaggaagtattacagcatcccag 279

                                                                       
Query: 362 ctggcagtgttgctcgatatagaaagtcactggcctgatcctggaacctgagttcaaccc 421
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctggcagtgttgctcggtatagaaagtcactggcctgatcctggaacctgagttcaaccc 219

                                                                       
Query: 422 ctagaccacacatctaatggtggaaagagaacaactctctcgggttgtgctccccctaca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctagaccacacatctaatggtggaaagagaacaactctctcgggttgtgctccccctaca 159

                                                                     
Query: 482 cacacacacacacacacacacaca-a-acacacacatacacacacacacacacacaca 537
           |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 158 cacacacacacacacacacacacacacacacacacatacacacacacaaacacacaca 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)