BAC Information

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BAC

Clone NameMSMg01-512M12
Chromosome2 (Build37)
Map Location 118,736,464 - 118,879,243
singlet/doubletdoublet
Overlap geneBahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd
Downstream geneRad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512M12.T7 (MSMg01no512_m12.b1)MSMg01-512M12.TJ (MSMg01no512_m12.g1)
ACCAG585661AG585662
length746771
length of high quality
(start - end)		592 (58 - 649)570 (63 - 632)
definitionCHROMAT_FILE: MSMg01no512_m12.b1 PHD_FILE: MSMg01no512_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:03 2005CHROMAT_FILE: MSMg01no512_m12.g1 PHD_FILE: MSMg01no512_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,878,652 - 118,879,243)(118,736,464 - 118,737,033)
sequence
TGCGGTCGCTAAACGATCTCACNATCAAAGAGGATCCGCGGAATTCATAT
TCCAGACCATACTGGCCTCAAACTCACAGATGATCTTTCTGCCTTTGCCT
CCTGAGTGTTGAGGTTTAAAGCAAGGATCACCACAACTGGCTTGACTGCT
TTAAACAAAATGTACATGAGTGTTTTGTTTGCATGTATGTCCGTGGAGGT
CAGAAAAGGAAACTGAATACCCTAGAACTGGAGTTAGGGACAGTTGTGAG
ATGCCACATAAGCACTGGAAATTGAACCAAACCCCCTGACAAGGGGCAAA
GAGACGCCTTGTTGGTGATACTGTTTTTATACTAAGCAGCGGCAGAGTAA
GTGGCAACCCTTTGTTCATTCTGGCTTGATAGTCAAAAGTTGTTTTATGC
CTAGAACTCATAAAAATCAAATCAAGGGGCTGGTGAGATGGCTCAGCTGG
TAAGAGCACCCAACTGCTCTTCTGAAGGTTCTGGGTTCAAATCCCAGCAA
CCACATGGTGGCTCACAACCATCCGTAAGGAGATCCGACTCCCTCTTCTG
GAGTGTCTGAGGACAGCTACAGTGTACTTACATATAATAAATAATAAATC
CTTAAAAAAAAAGGATCTGCTGAAAAATCAAATCAAGGGAGCTGGAGAGA
TGGCTCAGTGGTTAAGAGCACTGACTCCTCTTCTGAAGGTCCTGAGTTCA
ATTCCCAGCAATCACATGGTGGCTCACAATCATCTGTAATGGGATC

GTGAGTGGCCTGGCGGCCGCCTTTTCAAATACTTTAGGTGACCTATAGAT
GCCCCGCGGAATTCAGACTCTTCCAGTCTTGATCAGGTCTCAGCTCTGCT
GTGTGGAGCTGACTGGGGGCAAAGGTTGTAAGAGGTGCCCAGGTATGAGC
AGTGGGTGCTGAGTGCTCACAGGAGCACCAGGAAGAGCAGGGGGAGGGTA
AATTGGCTAAGGTAGAGGCTTGGACCTTTAAACAAATCCCCTCGGGCCAA
CAGTGTGGCTGGGGAGTGGGAGAGAGGCGTTTGCTGCCAGGCTTGATGGT
CTTACTTTCAGTGTTCAGGACCCTCCTAGCAGGAGAGAGGGACTCCCTCA
CAAGCTGTCCTCTGACCACCACATGTTCTGTTGGTGCATGCCCTCATACA
CATGTGCACATACCAAAAAAATGTTTAAAGAAAACCCCTAGAGACTAGTT
GGTGCTGCGTGTGGTTATCTCCTAACTTGTCAGTTTCGTGGAGCAGAACA
CAGACATAACTAAAGCACAGTGCTCTCTGCCCACAGTGCTCTCTGTGTAG
GGAACAGTAGGTAGGAAAGGTGCTTGCTGTCCTTTCTCCCTTCTTCAGCC
CCTGCCTGTTGGGGCTTTGCCTCAATACTGAGGCTTGGCAGTTTCTGACC
ACCCAGAGCTTAATCATTTCTGTTGTTATTACCCTAAACTTTGATCTCTA
ACAGACATGGGAGTTTGGGGCGCACACCTTCCACACTCACTTCCTCTCTT
TCTTCCGTATACGCATGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_m12.b1 MSMg01no512_m12.b1 CHROMAT_FILE:
MSMg01no512_m12.b1 PHD_FILE: MSMg01no512_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:03 2005
         (592 letters)



>mm_chr2_118878434_118879425
          Length = 992

 Score = 1145 bits (592), Expect = 0.0
 Identities = 592/592 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catactggcctcaaactcacagatgatctttctgcctttgcctcctgagtgttgaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 catactggcctcaaactcacagatgatctttctgcctttgcctcctgagtgttgaggttt 751

                                                                       
Query: 61  aaagcaaggatcaccacaactggcttgactgctttaaacaaaatgtacatgagtgttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aaagcaaggatcaccacaactggcttgactgctttaaacaaaatgtacatgagtgttttg 691

                                                                       
Query: 121 tttgcatgtatgtccgtggaggtcagaaaaggaaactgaataccctagaactggagttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttgcatgtatgtccgtggaggtcagaaaaggaaactgaataccctagaactggagttag 631

                                                                       
Query: 181 ggacagttgtgagatgccacataagcactggaaattgaaccaaaccccctgacaaggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggacagttgtgagatgccacataagcactggaaattgaaccaaaccccctgacaaggggc 571

                                                                       
Query: 241 aaagagacgccttgttggtgatactgtttttatactaagcagcggcagagtaagtggcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaagagacgccttgttggtgatactgtttttatactaagcagcggcagagtaagtggcaa 511

                                                                       
Query: 301 ccctttgttcattctggcttgatagtcaaaagttgttttatgcctagaactcataaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccctttgttcattctggcttgatagtcaaaagttgttttatgcctagaactcataaaaat 451

                                                                       
Query: 361 caaatcaaggggctggtgagatggctcagctggtaagagcacccaactgctcttctgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caaatcaaggggctggtgagatggctcagctggtaagagcacccaactgctcttctgaag 391

                                                                       
Query: 421 gttctgggttcaaatcccagcaaccacatggtggctcacaaccatccgtaaggagatccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gttctgggttcaaatcccagcaaccacatggtggctcacaaccatccgtaaggagatccg 331

                                                                       
Query: 481 actccctcttctggagtgtctgaggacagctacagtgtacttacatataataaataataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 actccctcttctggagtgtctgaggacagctacagtgtacttacatataataaataataa 271

                                                               
Query: 541 atccttaaaaaaaaaggatctgctgaaaaatcaaatcaagggagctggagag 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atccttaaaaaaaaaggatctgctgaaaaatcaaatcaagggagctggagag 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_m12.g1 MSMg01no512_m12.g1 CHROMAT_FILE:
MSMg01no512_m12.g1 PHD_FILE: MSMg01no512_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:03 2005
         (570 letters)



>mm_chr2_118736264_118737233
          Length = 970

 Score = 1087 bits (562), Expect = 0.0
 Identities = 568/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagactcttccagtcttgatcaggtctcagctctgctgtgtggagctgactgggggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagactcttccagtcttgatcaggtctcagctctgctgtgtggagctgactgggggcaa 260

                                                                       
Query: 61  aggttgtaagaggtgcccaggtatgagcagtgggtgctgagtgctcacaggagcaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggttgtaagaggtgcccaggtatgagcagtgggtgctgagtgctcacaggagcaccagg 320

                                                                       
Query: 121 aagagcagggggagggtaaattggctaaggtagaggcttggacctttaaacaaatcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagcagggggagggtaaattggctaaggtagaggcttggacctttaaacaaatcccct 380

                                                                       
Query: 181 cgggccaacagtgtggctggggagtgggagagaggcgtttgctgccaggcttgatggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggccaacagtgtggctggggagtgggagagaggcgtttgctgccaggcttgatggtct 440

                                                                       
Query: 241 tactttcagtgttcaggaccctcctagcaggagagagggactccctcacaagctgtcctc 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacgtccagtgttcaggaccctcctagcaggagagagggactccctcacaagctgtcctc 500

                                                                       
Query: 301 tgaccaccacatgttctgttggtgcatgccctcatacacatgtgcacataccaaaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaccaccacatgttctgttggtgcatgccctcatacacatgtgcacataccaaaaaaat 560

                                                                       
Query: 361 gtttaaagaaaacccctagagactagttggtgctgcgtgtggttatctcctaacttgtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttaaagaaaacccctagagactagttggtgctgcgtgtggttatctcctaacttgtca 620

                                                                       
Query: 421 gtttcgtggagcagaacacagacataactaaagcacagtgctctctgcccacagtgctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttcgtggagcagaacacagacataactaaagcacagtgctctctgcccacagtgctct 680

                                                                       
Query: 481 ctgtgtagggaacagtaggtaggaaaggtgcttgctgtcctttctcccttcttcagcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtgtagggaacagtaggtaggaaaggtgcttgctgtcctttctcccttcttcagcccc 740

                                         
Query: 541 tgcctgttggggctttgcctcaatactgag 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 tgcctgttggggctttgcctcaatactgag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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