BAC Information

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BAC

Clone NameMSMg01-512P08
Chromosome2 (Build37)
Map Location 72,890,276 - 73,037,628
singlet/doubletdoublet
Overlap geneGtpbp9, LOC620110
Upstream geneRapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5
Downstream geneSp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512P08.T7 (MSMg01no512_p08.b1)MSMg01-512P08.TJ (MSMg01no512_p08.g1)
ACCAG585797AG585798
length733744
length of high quality
(start - end)		535 (64 - 598)378 (75 - 452)
definitionCHROMAT_FILE: MSMg01no512_p08.b1 PHD_FILE: MSMg01no512_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:18 2005CHROMAT_FILE: MSMg01no512_p08.g1 PHD_FILE: MSMg01no512_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:18 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(73,037,094 - 73,037,628)(72,890,276 - 72,890,651)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTTCTTGATAAGCAGGTTCTTTATAATAAAATTATCTTTTGTA
TTTCAGCAAGATTCCTGCTTTCCTAAATGTAGTGGATATTGCTGGCCTTG
TAAAAGGAGCTCACAATGGGCAGGGCTTGGGGAATGCCTTTTTATCTCAT
ATTAGTGCCTGTGATGGGATTTTTCATCTAACACGTAAGTACAGCTGTTT
ATTAAGATAATATTTTTTTCTATATTGCACAAATAGAAGTGAGTGGTTTA
TAGAAGATAGCTTTGTTTTGCAAATTGAATCATAAATTCGTTTACTGTTT
CTAACTTAATATCCCTGTCATTTCTCCATAAGGTTCCTGAATAGCAAGTG
CATGATACAGTCTGGTTGAAGGTTATCCCTTGTTCTGAATTAGAGAACTG
AGGTGTGTTTCTGTGTGAACTGACTTGGGGATTATCAAGGCATTTTGACT
TTTTAAAAATTGTGCTGGGTTGAGCCCAGAACTGTGCATGCTTGGGTAAG
AAGAGCTCTGTACAAGGTTTTCCATAACATTTCAGTTCAATAGTGGCAGG
GGCTCTTGCCAGGGGTTTGCTGTTATGCTCTGAGGCTGAGATGTTGAAGA
TAGCGTCCTAAACACCAGCATAATCCTTGGTACTACACCTTCTTTCATGG
CTGTGCCAGGTTCATGGGACACAAAGCTGGAAA

CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATGAATTTGGAGCAATGACAGTGG
AGAGAGAATGCAACACACAAATACCCAAGGCTGTCCTGGAGTGGTCACAA
GACAAGCAGACGGGATGATCAATGGTCGACAAGAATATCCCCTAAGAGGC
AGCCCCCACCTAATGCCACGCCCATGTCCAGAGTAATCGTCCCACAGTGT
CACTTTTACTGGGTGATGGTCCATTCAACAATTTTTTCAATGCCCACACA
GGAACTCCACCCTGGCACTATCGGCCCATCCTGGGCGCTGTTCAACCCAA
CTGTTTTCTCGCTGTCTCCCAAACACCCAACTATGGGCCTTGCCCAGGTC
ACTCCCTACCTGGAAAGCTGCTCTGATTCTCTTCCCTGTGGTGGTGGTGG
CTGGTCGTGGTGGTGNTTCTTCTTTCTATTTTACAATTTCCTTCCTTTTC
TCTTTTTAATCTCTCTTTTTTTTTTTCCTCTTATTTTCTCCTTTTTTTAT
ATCACCGCTTCTCCTTTCTTTTAATCTCCTATTTTTCTACTCTCTGCCTT
TTTTCACTTATATATTTCTTCTTAATATCTTTTCTCCGTTTTCTTATTCC
TTTTGTTTTTGACTTGATAGGTGTTTAGTTCTCTTCATTTCTCTTTTTTC
ATATTTCCCTTCACTCACCCGCTATTTTCATTCTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_p08.b1 MSMg01no512_p08.b1 CHROMAT_FILE:
MSMg01no512_p08.b1 PHD_FILE: MSMg01no512_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:18 2005
         (535 letters)



>mm_chr2_73036894_73037828
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataagcaggttctttataataaaattatcttttgtatttcagcaagattcctgctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gataagcaggttctttataataaaattatcttttgtatttcagcaagattcctgctttcc 676

                                                                       
Query: 61  taaatgtagtggatattgctggccttgtaaaaggagctcacaatgggcagggcttgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 taaatgtagtggatattgctggccttgtaaaaggagctcacaatgggcagggcttgggga 616

                                                                       
Query: 121 atgcctttttatctcatattagtgcctgtgatgggatttttcatctaacacgtaagtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atgcctttttatctcatattagtgcctgtgatgggatttttcatctaacacgtaagtaca 556

                                                                       
Query: 181 gctgtttattaagataatatttttttctatattgcacaaatagaagtgagtggtttatag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gcagtttattaagataatatttttttctatattgcacaaatagaagtgagtggtttatag 496

                                                                       
Query: 241 aagatagctttgttttgcaaattgaatcataaattcgtttactgtttctaacttaatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aagatagctttgttttgcaaattgaatcataaattcgtttactgtttctaacttaatatc 436

                                                                       
Query: 301 cctgtcatttctccataaggttcctgaatagcaagtgcatgatacagtctggttgaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cctgtcatttctccataaggttcctgaatagcaagtgcatgatacagtctggttgaaggt 376

                                                                       
Query: 361 tatcccttgttctgaattagagaactgaggtgtgtttctgtgtgaactgacttggggatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tatcccttgttctgaattagagaactgaggtgtgtttctgtgtgaactgacttggggatt 316

                                                                       
Query: 421 atcaaggcattttgactttttaaaaattgtgctgggttgagcccagaactgtgcatgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atcaaggcattttgactttttaaaaattgtgctgggttgagcccagaactgtgcatgctt 256

                                                                  
Query: 481 gggtaagaagagctctgtacaaggttttccataacatttcagttcaatagtggca 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gggtaagaagagctctgtacaaggttttccataacatttcagttcaatagtggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_p08.g1 MSMg01no512_p08.g1 CHROMAT_FILE:
MSMg01no512_p08.g1 PHD_FILE: MSMg01no512_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:18 2005
         (378 letters)



>mm_chr2_72890076_72890853
          Length = 778

 Score =  673 bits (348), Expect = 0.0
 Identities = 369/376 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgaatttggagcaatgacagtggagagagaatgcaacacacaaatacccaaggctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgatgaatttggagcaatgacagtggagagagaatgcaacacacaaacacccaaggctgt 260

                                                                       
Query: 61  cctggagtggtcacaagacaagcagacgggatgatcaatggtcgacaagaatatccccta 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 cctggagtggtcacaagacaagcagacgggatgatcaatggtcaacaagaatatccccta 320

                                                                       
Query: 121 agaggcagcccccacctaatgccacgcccatgtccagagtaatcgtcccacagtgtcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggcagcccccacctaatgccacgcccatgtccagagtaatcgtcccacagtgtcact 380

                                                                       
Query: 181 tttactgggtgatggtccattcaacaattttttcaatgcccacacaggaactccaccctg 240
           ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttactgagtgatggcccgttcaacaattttttcaatgcccacacaggaactccaccctg 440

                                                                       
Query: 241 gcactatcggcccatcctgggcgctgttcaacccaactgttttctcgctgtctcccaaac 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactatcggcccatcctgggcactgttcaacccaactgttttctcgctgtctcccaaac 500

                                                                       
Query: 301 acccaactatgggccttgcccaggtcactccctacctggaaagctgctctgattctcttc 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccaactatgggccttgcccaggtcactccctacctggaaagctgctctgattctcttc 560

                           
Query: 361 cctgtggtggtggtgg 376
           ||||||||||||||||
Sbjct: 561 cctgtggtggtggtgg 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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